PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S02850.10

Common Name

JCGZ_26758, LOC105630352

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

SRS

Protein Properties

Length: 221aa MW: 24084 Da PI: 8.6502

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S02850.10	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	172.1	2.9e-53	9	144	4	154
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskke 99 g+++CqdCGnqakk+C+h+RCRtCCks+gf+C+thvkstW+pa++rr r ++ a ++++ ++++r+ +s+ ++ +ls + + Jcr4S02850.10 9 GGSRCQDCGNQAKKECVHMRCRTCCKSKGFECQTHVKSTWIPAYRRRLRPSNIAVQQQN--------PHQQPRT-----NSNPKRLRLS---PLTG 88 6789******************************************97666664333........3334443.....3444455544...3457 PP DUF702 100 letsslPeevsseavfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydqGlee 154 le+ ++P+ev+s a frc r+ss+d+ g+ +laYqt+v igGhvf+GiLydqG+++ Jcr4S02850.10 89 LEVGNFPAEVNSIATFRCFRMSSIDEeGDYQLAYQTSVGIGGHVFQGILYDQGPHQ 144 89999****************978999*********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.7E-53	10	143	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	2.3E-28	13	54	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	8.4E-23	94	142	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 221 aa Download sequence Send to blast
MMRQGGLLGG SRCQDCGNQA KKECVHMRCR TCCKSKGFEC QTHVKSTWIP AYRRRLRPSN 60 IAVQQQNPHQ QPRTNSNPKR LRLSPLTGLE VGNFPAEVNS IATFRCFRMS SIDEEGDYQL 120 AYQTSVGIGG HVFQGILYDQ GPHQESFSTQ LLQDTNNNNN NLTSSGALIS TSTALTTAIT 180 TATTTAASIL SSSVGAEHSS SYPFPLNAFT SGSGLMYVCH P

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:16740146}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012067549.1	1e-136	protein SHI RELATED SEQUENCE 3
Swissprot	Q9LQZ5	2e-51	SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBL	A0A067LB87	1e-135	A0A067LB87_JATCU; Uncharacterized protein
STRING	POPTR_0009s12450.1	6e-73	(Populus trichocarpa)
STRING	cassava4.1_021477m	7e-73	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9969	25	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51060.1	6e-51	Lateral root primordium (LRP) protein-related

Link Out ? help Back to Top
Entrez Gene	105630352

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971] Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]