PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S02856.10

Common Name

JCGZ_16312, LOC105650765

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

LBD

Protein Properties

Length: 215aa MW: 23196.4 Da PI: 6.9645

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S02856.10	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	92.3	5.7e-29	2	101	1	95
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +C++C++lr++C++dC+l++ + p++q++++ +v+k+FG++ ++++++++p+++r+ +++sl++eA r+ +Pv+Gavg++++++++++q++ Jcr4S02856.10 2 SCNGCRILRKGCSEDCILRQSLqsidnPQSQANATVFVAKFFGRAGLMSFISSVPQNQRPSLFQSLLFEAVGRTVNPVSGAVGLLWTGNWHICQAA 97 6***********************99****************************************************************99 PP DUF260 92 aela 95 + ++ Jcr4S02856.10 98 VMTV 101 7665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	18.277	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.1E-25	2	98	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MSCNGCRILR KGCSEDCILR QSLQSIDNPQ SQANATVFVA KFFGRAGLMS FISSVPQNQR 60 PSLFQSLLFE AVGRTVNPVS GAVGLLWTGN WHICQAAVMT VLRGGTIEPV LEFEGGILAP 120 DYGNLSECAS FSPKANVDSV SKATATLKRT RSDFDKEEAK CGLTSNLDLC LMYSEEKPRA 180 VSSSEESETT TLGSSGTYCR SSLQGGERKL LTLFI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012093105.1	1e-158	LOB domain-containing protein 39
Swissprot	Q9SZE8	5e-63	LBD39_ARATH; LOB domain-containing protein 39
TrEMBL	A0A067LJK7	1e-156	A0A067LJK7_JATCU; Uncharacterized protein
STRING	XP_002527499.1	1e-102	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF721	34	136

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37540.1	6e-62	LOB domain-containing protein 39

Link Out ? help Back to Top
Entrez Gene	105650765

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]