PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S02864.10
Common NameJCGZ_02002, LOC105631806
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family C3H
Protein Properties Length: 349aa    MW: 37654.5 Da    PI: 8.2643
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S02864.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.61.8e-124974227
                   -S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                   ++++C +++rtG+C yG+rC+F+H++
  Jcr4S02864.10 49 DEANCIYYLRTGFCGYGARCRFNHPR 74
                   6899********************96 PP
2zf-CCCH406.4e-1396120327
                    S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                    ++ C++++rtGtCk+G++Ck++H++
  Jcr4S02864.10  96 QPVCQYYMRTGTCKFGASCKYHHPK 120
                    689********************96 PP
3zf-CCCH35.71.5e-11141166227
                    -S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                    ++++C ++ +tG+Ck+G++CkF+H++
  Jcr4S02864.10 141 GEKECTYYVKTGQCKFGATCKFHHPQ 166
                    7899********************97 PP
4zf-CCCH39.31.1e-12300325227
                    -S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                    ++++C+++++tG Ck+G++C+++H+p
  Jcr4S02864.10 300 DQPECQYYMKTGNCKFGSSCRYHHPP 325
                    689*********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.6194775IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-44774IPR000571Zinc finger, CCCH-type
PfamPF006426.2E-104974IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-65075IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.6E-65374IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.88293121IPR000571Zinc finger, CCCH-type
SMARTSM003562.7E-793120IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.76E-796122IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-1096120IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-698122IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-5139166IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.094139167IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-6141167IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-9141166IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-4145165IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.009298326IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-6298325IPR000571Zinc finger, CCCH-type
PfamPF006424.2E-10300325IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-6301326IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.3E-6304325IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MDRYGRNQEG SQSDPSPEWT TPGPESGLEE GVWPLGLGEG ESGYPERPDE ANCIYYLRTG  60
FCGYGARCRF NHPRDRGAVI GAARAGAGEF PERVGQPVCQ YYMRTGTCKF GASCKYHHPK  120
QEGGSVSPVS LNYYGYPLRP GEKECTYYVK TGQCKFGATC KFHHPQPANL QIVPQSPAPQ  180
VAPVPAPIPA PALYPSSVPS TQQYGLVVAR PSLLPSSYVQ GPYGPMLLSP GVVPYPSWSP  240
YPAPVSPVAS PSTQPGVGSG SLYQLSPSAP AYTGAYQSML SSVGPSSSSQ KEPFFPERPD  300
QPECQYYMKT GNCKFGSSCR YHHPPELIAP KTNVVLSPIG LPLRPVRII
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012069378.10.0zinc finger CCCH domain-containing protein 34
SwissprotQ9SQU41e-139C3H34_ARATH; Zinc finger CCCH domain-containing protein 34
TrEMBLA0A067L7C50.0A0A067L7C5_JATCU; Uncharacterized protein
STRINGcassava4.1_024892m0.0(Manihot esculenta)
STRINGXP_002516892.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98334117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06410.11e-112C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]