PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S02890.10
Common NameJCGZ_17229, LOC105640479
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family ERF
Protein Properties Length: 196aa    MW: 21225.7 Da    PI: 4.495
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S02890.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.18.9e-181969155
            AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                   s+y+G+r++k +g+Wv+eIr+p   gk++r++lg++  +e+Aa+a++ a++ ++g
  Jcr4S02890.10 19 SRYRGIRQRK-WGKWVSEIREP---GKKTRIWLGSYELPEMAAAAYDVAALHFRG 69
                   79*******9.**********8...557**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.9E-211978IPR016177DNA-binding domain
PfamPF008479.2E-121969IPR001471AP2/ERF domain
CDDcd000182.00E-211979No hitNo description
PROSITE profilePS5103222.4972077IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-302078IPR001471AP2/ERF domain
SMARTSM003807.8E-362083IPR001471AP2/ERF domain
PRINTSPR003672.2E-122132IPR001471AP2/ERF domain
PRINTSPR003672.2E-125979IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MEDIYTTTVD SGRTGLPPSR YRGIRQRKWG KWVSEIREPG KKTRIWLGSY ELPEMAAAAY  60
DVAALHFRGS GAHLNFPELV DSLPRPASSS AEDVQMAAQE AAMRFGNNIR ATKCSEVGGC  120
GGSGGGSGGV GDGLGPVRIG LSPSQIQAIN ETPLDSPKMW MELAGALLLA ESTAWENVDF  180
DFNELEEIED TSIWNY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-172182668ATERF1
3gcc_A3e-172182668ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012080193.11e-143ethylene-responsive transcription factor ERF022
SwissprotQ9C9I21e-49ERF21_ARATH; Ethylene-responsive transcription factor ERF021
TrEMBLA0A067LB401e-142A0A067LB40_JATCU; Uncharacterized protein
STRINGXP_002534488.16e-82(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17773191
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.12e-48ERF family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]