PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S02944.10

Common Name

JCGZ_08681, LOC105635628

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

C2H2

Protein Properties

Length: 166aa MW: 18346.1 Da PI: 9.0767

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S02944.10	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.4	0.00011	50	72	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H Jcr4S02944.10 50 FSCNYCQRKFYSSQALGGHQNAH 72 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.33E-6	46	77	No hit	No description
PROSITE profile	PS50157	11.094	50	77	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	52	72	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 166 aa Download sequence Send to blast
MDYQPNTSLN LSLPHNNKNN DQLNLELVLE PSSSSSSFSS PHSLTEPRIF SCNYCQRKFY 60 SSQALGGHQN AHKLERTLAK RSRELSSAVR AHGGSISNQS PRSGGGFSHA RRNQPGSGGG 120 SYGRRDMMMN YSGGSNIDAS ASWSMEYYRP ETVQEELSQI DLSLRL

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of floral organ abscission. Participates in processes that directly or indirectly influence shedding of floral organs. {ECO:0000269\|PubMed:18192438}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012074097.1	1e-119	zinc finger protein 2
Swissprot	Q39261	3e-34	ZFP2_ARATH; Zinc finger protein 2
TrEMBL	A0A067KJV9	1e-117	A0A067KJV9_JATCU; Uncharacterized protein
STRING	cassava4.1_029187m	4e-53	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9619	23	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57520.1	9e-35	zinc finger protein 2

Link Out ? help Back to Top
Entrez Gene	105635628

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]