PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S02992.40
Common NameGRAS37, JCGZ_13432
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family GRAS
Protein Properties Length: 556aa    MW: 61093 Da    PI: 5.3302
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S02992.40genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS459.52.1e-1401905511374
           GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                    lv++Ll+cAeav++++l+la+alL+++  la++++++m+++a+yf+eALa+r+++    +y    p+e+ + + s++l +   f+e++P+lkf+h+
  Jcr4S02992.40 190 LVHTLLACAEAVQQDNLKLAEALLKHIGLLAASQASSMRKVATYFAEALARRIYK----IY----PQESLDPSYSDTLEM--HFYETCPYLKFAHF 275
                    689****************************************************....44....444443445555555..5************* PP

           GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlele 192
                    taNqaIlea+++++rvH+iDf+++qG+QWpaL+qaLa Rp+gpps+R+Tg+g+p+++++++l+++g++La++Ae++gv+fef+ +va++l+dl++e
  Jcr4S02992.40 276 TANQAILEAFSTANRVHVIDFGLKQGMQWPALMQALALRPGGPPSFRLTGIGPPQPNNTDTLQQVGWKLAQLAEAIGVEFEFRGFVANSLADLQPE 371
                    ************************************************************************************************ PP

           GRAS 193 eLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEr 287
                    +L+v+p  E++aVn+v++lhrll++++ +++    vL+ vk ++Pk+v++veqea+hn++ Fl+rf+eal+yys+lfdsle + +   +++ ++++
  Jcr4S02992.40 372 MLDVRPdVETVAVNSVFELHRLLARPGGIDK----VLSSVKAMKPKIVTIVEQEANHNGPVFLDRFTEALHYYSSLFDSLEGSGSVVPSQDLVMSE 463
                    ******99***************99998888....*********************************************99977777******** PP

           GRAS 288 ellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     +lgr+i+nvva ega+r+erhetl++Wr r+++aGF+pv+l+++a+kqa +ll  ++ +dgyrvee++g+l+lgW++rpL+++SaW+
  Jcr4S02992.40 464 LYLGRQICNVVAWEGADRVERHETLAQWRTRIDAAGFEPVHLGSNAYKQAGMLLDIFAgGDGYRVEEKDGCLMLGWHTRPLIVTSAWK 551
                    ***************************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011294.3E-13577No hitNo description
PfamPF120412.0E-222370IPR021914Transcriptional factor DELLA, N-terminal
PROSITE profilePS5098568.704164530IPR005202Transcription factor GRAS
PfamPF035147.2E-138190551IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0042538Biological Processhyperosmotic salinity response
GO:2000033Biological Processregulation of seed dormancy process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 556 aa     Download sequence    Send to blast
MWVAAATAKV TKSGHRTWPT LLKRLEQLEM VMGTAQEDGI SHLSTDTVHY NPSDLSGWVQ  60
SMLSEFNNSP FGLDSSDILQ NQDSTISFSR NPQPGIFSDD SEYDLRAIPG VIAYPPPPPQ  120
QQQNDSLERE STNSRKRMKM ASGSDNNLTV SSSSSLSSPS PPSQITISGN LSESARPVVL  180
IDSQETGIRL VHTLLACAEA VQQDNLKLAE ALLKHIGLLA ASQASSMRKV ATYFAEALAR  240
RIYKIYPQES LDPSYSDTLE MHFYETCPYL KFAHFTANQA ILEAFSTANR VHVIDFGLKQ  300
GMQWPALMQA LALRPGGPPS FRLTGIGPPQ PNNTDTLQQV GWKLAQLAEA IGVEFEFRGF  360
VANSLADLQP EMLDVRPDVE TVAVNSVFEL HRLLARPGGI DKVLSSVKAM KPKIVTIVEQ  420
EANHNGPVFL DRFTEALHYY SSLFDSLEGS GSVVPSQDLV MSELYLGRQI CNVVAWEGAD  480
RVERHETLAQ WRTRIDAAGF EPVHLGSNAY KQAGMLLDIF AGGDGYRVEE KDGCLMLGWH  540
TRPLIVTSAW KPGGSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-6919755226380Protein SCARECROW
5b3h_A2e-6919755225379Protein SCARECROW
5b3h_D2e-6919755225379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that represses transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM4052510.0KM405251.1 Jatropha curcas GRAS37 protein (GRAS37) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012077792.20.0DELLA protein GAI
SwissprotQ84TQ70.0GAI_GOSHI; DELLA protein GAI
TrEMBLA0A067KAJ20.0A0A067KAJ2_JATCU; GRAS37 protein
STRINGcassava4.1_003741m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80334121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.10.0RGA-like 2
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]