PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S03065.20

Common Name

JCGZ_13349, LOC105639381

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

YABBY

Protein Properties

Length: 185aa MW: 20877.6 Da PI: 8.0734

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S03065.20	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	197.1	7.5e-61	6	158	4	170
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsse 99 + +eq+Cy+ CnfCn +lavsvP +slf +vtvrCGhCt+l svn+a a q l+ ++ ++ + ++ +++++++ s++s Jcr4S03065.20 6 DAVPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQDV--------QAPSYSLPDYRIELGSSSKHNNKISMRSP 93 5679******************************************99999998885........22222233333333333333333333332 PP YABBY 100 klsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++++ v+rPPekrqr+Psayn+fikeeiqrika+nPdishreafs+aaknWah+P+ihfgl Jcr4S03065.20 94 ------ASHASEERVVNRPPEKRQRIPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHYPHIHFGL 158 ......22233334589**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	4.6E-70	9	158	IPR006780	YABBY protein
SuperFamily	SSF47095	7.2E-8	101	151	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	2.1E-4	106	151	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:1902183	Biological Process	regulation of shoot apical meristem development
GO:2000024	Biological Process	regulation of leaf development

Sequence ? help Back to Top
Protein Sequence Length: 185 aa Download sequence Send to blast
MSSCVDAVPE QLCYIPCNFC NIVLAVSVPC SSLFDIVTVR CGHCTNLWSV NMAAAFQSLS 60 WQDVQAPSYS LPDYRIELGS SSKHNNKISM RSPASHASEE RVVNRPPEKR QRIPSAYNQF 120 IKEEIQRIKA NNPDISHREA FSTAAKNWAH YPHIHFGLML ETNNQAQLDD ASEKHLKSRA 180 ALYNK

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT052446	4e-72	BT052446.1 Medicago truncatula clone MTYFD_FE_FF_FG1G-L-9 unknown mRNA.
GenBank	BT133581	4e-72	BT133581.1 Medicago truncatula clone JCVI-FLMt-10H8 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012078813.1	1e-137	axial regulator YABBY 5
Swissprot	Q8GW46	5e-89	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	A0A067KKT0	1e-136	A0A067KKT0_JATCU; Uncharacterized protein
STRING	cassava4.1_017143m	1e-128	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1124	34	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	2e-91	YABBY family protein

Link Out ? help Back to Top
Entrez Gene	105639381

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971] Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]