PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S03153.10
Common NameJCGZ_12260
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family HD-ZIP
Protein Properties Length: 211aa    MW: 24439.8 Da    PI: 8.8616
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S03153.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.43.4e-2054108357
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
       Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                    k++++++eq++ Le+ F +++++  e++ +LA++lgL+ rqV vWFqNrRa++k+
  Jcr4S03153.10  54 KKRKLSSEQVNLLEKNFGNEHKLESERKDKLASELGLDPRQVAVWFQNRRARWKN 108
                    45689************************************************95 PP
2HD-ZIP_I/II121.63.8e-3954145293
    HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                    kkr+ls+eqv+lLE++F +e+kLe+erK +la+eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+a+++++ e++rLe+ev +L+e+l+e
  Jcr4S03153.10  54 KKRKLSSEQVNLLEKNFGNEHKLESERKDKLASELGLDPRQVAVWFQNRRARWKNKKLEEEYTKLKTAHESIVVEKCRLESEVLKLKEQLSE 145
                    9****************************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.02249109IPR001356Homeobox domain
SMARTSM003895.0E-1952113IPR001356Homeobox domain
SuperFamilySSF466891.88E-1853116IPR009057Homeodomain-like
PfamPF000462.1E-1754108IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.7E-2156116IPR009057Homeodomain-like
CDDcd000861.45E-1556110No hitNo description
PRINTSPR000318.4E-68089IPR000047Helix-turn-helix motif
PROSITE patternPS00027084107IPR017970Homeobox, conserved site
PRINTSPR000318.4E-689105IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MTTTMSNKVE DHMVLLSQLY PGVYTQMVPQ QGEAKPRRRR KKNKGGEGGV GGAKKRKLSS  60
EQVNLLEKNF GNEHKLESER KDKLASELGL DPRQVAVWFQ NRRARWKNKK LEEEYTKLKT  120
AHESIVVEKC RLESEVLKLK EQLSEAENEI HRLTERIDGV SSNSPSSTLS MEAMKPTFLG  180
EFGMEGYGDI FYMPENYYIH GMEWFNDQLY M
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13755RRRKKNKGGEGGVGGAKKR
23956RKKNKGGEGGVGGAKKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012079075.11e-156homeobox-leucine zipper protein ATHB-40 isoform X1
RefseqXP_020537183.11e-156homeobox-leucine zipper protein ATHB-40 isoform X2
SwissprotQ9ZU705e-78ATB21_ARATH; Homeobox-leucine zipper protein ATHB-21
TrEMBLA0A067KIZ91e-155A0A067KIZ9_JATCU; Uncharacterized protein
STRINGcassava4.1_026937m1e-111(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47893257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18550.19e-59homeobox protein 21
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]
  3. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]