PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S03153.50
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family GRAS
Protein Properties Length: 656aa    MW: 74083.8 Da    PI: 6.4122
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S03153.50genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS39.77.4e-13160239285
           GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 
                    ++  +++A++++s++l+la+ +L rl+++ ++p g+p++R+a++f+eAL++ l++s+ ++     ++ +s+ +++++++a+k+fs
  Jcr4S03153.50 160 IQEFIRAADCIDSNELQLAHVILDRLNHRlQAPVGKPLKRAAFFFKEALQSLLTGSTRSV-----TRLSSWFDVVQTVKAYKAFS 239
                    78899***********************99*************************55444.....45555556888888888886 PP

2GRAS146.32.9e-45240476116359
           GRAS 116 DfdisqGlQWpaLlqaLasRpeg....ppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlv 207
                    Dfdi+ G Q+++++++L +++++    +p lRiT+++   ++ + e++ +++ L+++A el+++f++++++ +++e+++++++++  gE++a+ l+
  Jcr4S03153.50 240 DFDIGLGCQYASFMRELFEKADSckltSPVLRITAIVT--EDCAIETQLIKQCLSQYAIELKIRFQIEFVLFRTFEMVSFKSIKFIDGEKTAILLS 333
                    9*******************95555559**********..55****************************************************** PP

           GRAS 208 lqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvace 301
                     + +  l +s s++     ++  ++++sP vvvvv++e  ++  ++sF + f+++le++s++f+sl+a  ++  ++++ +E  ll+++i ++v + 
  Jcr4S03153.50 334 PAFFGRLGSSNSITA----FVTELRRVSPGVVVVVDNEgwTESVATSFRRNFVNSLEFFSMIFESLDAA-AAGGDWAKRIEMYLLKPRIFSAVEAC 424
                    ******955555555....*******************44444678********************999.57789999****************** PP

           GRAS 302 gaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslv 359
                    g++         +W+e++  aG++p+ ls++a  q+++ll kv+++g+   +++++lv
  Jcr4S03153.50 425 GRR------VSPSWKEAFCVAGMRPMVLSQFADFQVECLLGKVQVKGFYAAKRQAELV 476
                    *98......789*************************************999999987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035142.6E-10160239IPR005202Transcription factor GRAS
PfamPF035141.0E-42240476IPR005202Transcription factor GRAS
PROSITE profilePS5098516.008240471IPR005202Transcription factor GRAS
PfamPF031346.5E-26503579IPR004345TB2/DP1/HVA22-related protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0030154Biological Processcell differentiation
GO:0048831Biological Processregulation of shoot system development
Sequence ? help Back to Top
Protein Sequence    Length: 656 aa     Download sequence    Send to blast
MKVPVSSPQN PKHTNIARNI AFHTDNTTPN LTYEPTSVLD LRRSPSPASG KPVSATDHSL  60
EWEEHVLQNF DWDSIMKELD FHEDSAPTFK TFPQVGSCES IVHNQNLQEF TLPSHADPAQ  120
FLHSDFNDIS FNVLPTQNLS TTLDLSHSTG NWNNFGYDLI QEFIRAADCI DSNELQLAHV  180
ILDRLNHRLQ APVGKPLKRA AFFFKEALQS LLTGSTRSVT RLSSWFDVVQ TVKAYKAFSD  240
FDIGLGCQYA SFMRELFEKA DSCKLTSPVL RITAIVTEDC AIETQLIKQC LSQYAIELKI  300
RFQIEFVLFR TFEMVSFKSI KFIDGEKTAI LLSPAFFGRL GSSNSITAFV TELRRVSPGV  360
VVVVDNEGWT ESVATSFRRN FVNSLEFFSM IFESLDAAAA GGDWAKRIEM YLLKPRIFSA  420
VEACGRRVSP SWKEAFCVAG MRPMVLSQFA DFQVECLLGK VQVKGFYAAK RQAELVGLRL  480
LLCPLGSNIV VRTACCSVGV VLPVYSTFKA IEKKDQNEQQ KWLIYWAAYG SFTLVEAFAD  540
KLISWVPMYY HVKFAFLVWL QLPLSDGAMQ LYKNHLRPFF LRHQARVDLL VGLTYGEMVR  600
IISKHQAEIE YARAILLKIT GPADQTSKRE SDLSVEHLAI EGETRTSTDT ESDFDD
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM4052730.0KM405273.1 Jatropha curcas GRAS47 protein (GRAS47) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012079070.10.0scarecrow-like protein 15
SwissprotO232101e-138SCL15_ARATH; Scarecrow-like protein 15
TrEMBLA0A067K6F50.0A0A067K6F5_JATCU; GRAS47 protein
STRINGEOX911560.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59593252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-135GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]