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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Jcr4S03153.50 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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| Family | GRAS | ||||||||
| Protein Properties | Length: 656aa MW: 74083.8 Da PI: 6.4122 | ||||||||
| Description | GRAS family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | GRAS | 39.7 | 7.4e-13 | 160 | 239 | 2 | 85 |
GRAS 2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85
++ +++A++++s++l+la+ +L rl+++ ++p g+p++R+a++f+eAL++ l++s+ ++ ++ +s+ +++++++a+k+fs
Jcr4S03153.50 160 IQEFIRAADCIDSNELQLAHVILDRLNHRlQAPVGKPLKRAAFFFKEALQSLLTGSTRSV-----TRLSSWFDVVQTVKAYKAFS 239
78899***********************99*************************55444.....45555556888888888886 PP
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| 2 | GRAS | 146.3 | 2.9e-45 | 240 | 476 | 116 | 359 |
GRAS 116 DfdisqGlQWpaLlqaLasRpeg....ppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlv 207
Dfdi+ G Q+++++++L +++++ +p lRiT+++ ++ + e++ +++ L+++A el+++f++++++ +++e+++++++++ gE++a+ l+
Jcr4S03153.50 240 DFDIGLGCQYASFMRELFEKADSckltSPVLRITAIVT--EDCAIETQLIKQCLSQYAIELKIRFQIEFVLFRTFEMVSFKSIKFIDGEKTAILLS 333
9*******************95555559**********..55****************************************************** PP
GRAS 208 lqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvace 301
+ + l +s s++ ++ ++++sP vvvvv++e ++ ++sF + f+++le++s++f+sl+a ++ ++++ +E ll+++i ++v +
Jcr4S03153.50 334 PAFFGRLGSSNSITA----FVTELRRVSPGVVVVVDNEgwTESVATSFRRNFVNSLEFFSMIFESLDAA-AAGGDWAKRIEMYLLKPRIFSAVEAC 424
******955555555....*******************44444678********************999.57789999****************** PP
GRAS 302 gaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslv 359
g++ +W+e++ aG++p+ ls++a q+++ll kv+++g+ +++++lv
Jcr4S03153.50 425 GRR------VSPSWKEAFCVAGMRPMVLSQFADFQVECLLGKVQVKGFYAAKRQAELV 476
*98......789*************************************999999987 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF03514 | 2.6E-10 | 160 | 239 | IPR005202 | Transcription factor GRAS |
| Pfam | PF03514 | 1.0E-42 | 240 | 476 | IPR005202 | Transcription factor GRAS |
| PROSITE profile | PS50985 | 16.008 | 240 | 471 | IPR005202 | Transcription factor GRAS |
| Pfam | PF03134 | 6.5E-26 | 503 | 579 | IPR004345 | TB2/DP1/HVA22-related protein |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0030154 | Biological Process | cell differentiation | ||||
| GO:0048831 | Biological Process | regulation of shoot system development | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 656 aa Download sequence Send to blast |
MKVPVSSPQN PKHTNIARNI AFHTDNTTPN LTYEPTSVLD LRRSPSPASG KPVSATDHSL 60 EWEEHVLQNF DWDSIMKELD FHEDSAPTFK TFPQVGSCES IVHNQNLQEF TLPSHADPAQ 120 FLHSDFNDIS FNVLPTQNLS TTLDLSHSTG NWNNFGYDLI QEFIRAADCI DSNELQLAHV 180 ILDRLNHRLQ APVGKPLKRA AFFFKEALQS LLTGSTRSVT RLSSWFDVVQ TVKAYKAFSD 240 FDIGLGCQYA SFMRELFEKA DSCKLTSPVL RITAIVTEDC AIETQLIKQC LSQYAIELKI 300 RFQIEFVLFR TFEMVSFKSI KFIDGEKTAI LLSPAFFGRL GSSNSITAFV TELRRVSPGV 360 VVVVDNEGWT ESVATSFRRN FVNSLEFFSM IFESLDAAAA GGDWAKRIEM YLLKPRIFSA 420 VEACGRRVSP SWKEAFCVAG MRPMVLSQFA DFQVECLLGK VQVKGFYAAK RQAELVGLRL 480 LLCPLGSNIV VRTACCSVGV VLPVYSTFKA IEKKDQNEQQ KWLIYWAAYG SFTLVEAFAD 540 KLISWVPMYY HVKFAFLVWL QLPLSDGAMQ LYKNHLRPFF LRHQARVDLL VGLTYGEMVR 600 IISKHQAEIE YARAILLKIT GPADQTSKRE SDLSVEHLAI EGETRTSTDT ESDFDD |
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. | |||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | KM405273 | 0.0 | KM405273.1 Jatropha curcas GRAS47 protein (GRAS47) mRNA, complete cds. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_012079070.1 | 0.0 | scarecrow-like protein 15 | ||||
| Swissprot | O23210 | 1e-138 | SCL15_ARATH; Scarecrow-like protein 15 | ||||
| TrEMBL | A0A067K6F5 | 0.0 | A0A067K6F5_JATCU; GRAS47 protein | ||||
| STRING | EOX91156 | 0.0 | (Theobroma cacao) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF5959 | 32 | 52 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G36710.1 | 1e-135 | GRAS family protein | ||||
| Publications ? help Back to Top | |||
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