PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S03165.30
Common NameJCGZ_11252
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family C2H2
Protein Properties Length: 61aa    MW: 5963.62 Da    PI: 10.9729
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S03165.30genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.98.6e-063558123
                   EEETTTTEEESSHHHHHHHHHH.T CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirt.H 23
                   ++C+ C++sF +   L++H +  H
  Jcr4S03165.30 35 FSCKSCDRSFGSDGALQSHSKAkH 58
                   89*****************98777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.38E-52957No hitNo description
Gene3DG3DSA:3.30.160.600.0013557IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.6763561IPR007087Zinc finger, C2H2
PROSITE patternPS0002803758IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 61 aa     Download sequence    Send to blast
GKKGGHTATP HPAKGAAKTA AVGSNAKSPK SGGQFSCKSC DRSFGSDGAL QSHSKAKHGG  60
K
Functional Description ? help Back to Top
Source Description
UniProtMediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012076192.12e-34histone deacetylase HDT1
SwissprotQ9M4U53e-14HDT2_MAIZE; Histone deacetylase HDT2
TrEMBLA0A067KRB37e-33A0A067KRB3_JATCU; Uncharacterized protein
STRINGcassava4.1_013369m9e-25(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10253067
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03740.15e-13histone deacetylase 2C
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]