PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S03167.10

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

TCP

Protein Properties

Length: 449aa MW: 49281.4 Da PI: 7.1139

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S03167.10	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	23.8	1.4e-07	37	93	20	76
TCP 20 RRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceae 76 +RvR++a c +F L +e G+ +d+ i WL+ + p+ +++ s+s+ s+ + Jcr4S03167.10 37 KRVRVPAICVPAIFHLKKERGLRSDGDIIHWLIHELRPELLPAPKPSNSPRSRPIRN 93 8******************************************99988888655222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.60.110.10	2.5E-59	129	420	IPR003010	Carbon-nitrogen hydrolase
SuperFamily	SSF56317	1.19E-57	130	422	IPR003010	Carbon-nitrogen hydrolase
CDD	cd07564	4.09E-104	131	419	No hit	No description
PROSITE profile	PS50263	36.008	131	422	IPR003010	Carbon-nitrogen hydrolase
Pfam	PF00795	8.2E-51	132	406	IPR003010	Carbon-nitrogen hydrolase
PROSITE pattern	PS00920	0	163	178	IPR000132	Nitrilase/cyanide hydratase, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006807	Biological Process	nitrogen compound metabolic process
GO:0016810	Molecular Function	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds

Sequence ? help Back to Top
Protein Sequence Length: 449 aa Download sequence Send to blast
MEIRQLQPSS ENAQSDAKRG KPTRRRFTGD AHVPINKRVR VPAICVPAIF HLKKERGLRS 60 DGDIIHWLIH ELRPELLPAP KPSNSPRSRP IRNSVNDSVP KPVCMEYLND DKVASYLPVA 120 SGTATAKGKP VRATVVQAST VLFDTPATLD KAERLIAGAA AYGSQLVVFP EAFLGGYPQY 180 LTFDSARDDL QKYYTSAIDV PGPEVDWLAK IAGKYKVHLV MGVVERAGCY LFSTVLFFDS 240 LGQRLGQQRK LMPVASESAV WYSGQKSSLP VYETSIGKIG GLVCWDNKSP LLRTELYAKE 300 FIYIVEWISF YIIEFCPALL VEIWKSSMIH IAVEGGCFVL SASQLCRRDY PLSFGDSNSD 360 KSLDVITSGG GSVIVSPSGT VLAGPNYQKE CLISADLDLS EINRAKTEFG AIGNNLKPDH 420 VGWCASELNP ILLATDIKIE DPNDNELSG

Sequence ? help Back to Top

Protein Sequence Length: 449 aa Download sequence Send to blast

MEIRQLQPSS ENAQSDAKRG KPTRRRFTGD AHVPINKRVR VPAICVPAIF HLKKERGLRS  60
DGDIIHWLIH ELRPELLPAP KPSNSPRSRP IRNSVNDSVP KPVCMEYLND DKVASYLPVA  120
SGTATAKGKP VRATVVQAST VLFDTPATLD KAERLIAGAA AYGSQLVVFP EAFLGGYPQY  180
LTFDSARDDL QKYYTSAIDV PGPEVDWLAK IAGKYKVHLV MGVVERAGCY LFSTVLFFDS  240
LGQRLGQQRK LMPVASESAV WYSGQKSSLP VYETSIGKIG GLVCWDNKSP LLRTELYAKE  300
FIYIVEWISF YIIEFCPALL VEIWKSSMIH IAVEGGCFVL SASQLCRRDY PLSFGDSNSD  360
KSLDVITSGG GSVIVSPSGT VLAGPNYQKE CLISADLDLS EINRAKTEFG AIGNNLKPDH  420
VGWCASELNP ILLATDIKIE DPNDNELSG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3wuy_A	2e-41	129	446	14	336	Nitrilase
3wuy_B	2e-41	129	446	14	336	Nitrilase
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Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the cyanide detoxification pathway. Has nitrilase and nitrile-hydratase activity in the ratio 4.0:1, producing both asparagine and aspartic acid from beta-cyano-L-alanine (Ala(CN)). Can also use 3-phenylpropionitrile as substrate, but not indole-3-acetonitrile. {ECO:0000269\|PubMed:16786295}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012074431.1	0.0	bifunctional nitrilase/nitrile hydratase NIT4B
Swissprot	Q5QGZ8	1e-109	NRL4A_LUPAN; Bifunctional nitrilase/nitrile hydratase NIT4A
TrEMBL	A0A2C9V804	0.0	A0A2C9V804_MANES; Uncharacterized protein
STRING	cassava4.1_008964m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4583	8	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47620.1	6e-10	TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14

Publications ? help Back to Top
Piotrowski M,Volmer JJ Cyanide metabolism in higher plants: cyanoalanine hydratase is a NIT4 homolog. Plant Mol. Biol., 2006. 61(1-2): p. 111-22 [PMID:16786295] Shearer AG,Altman T,Rhee CD Finding sequences for over 270 orphan enzymes. PLoS ONE, 2014. 9(5): p. e97250 [PMID:24826896]