PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S03304.20
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family HSF
Protein Properties Length: 728aa    MW: 81931 Da    PI: 6.2467
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S03304.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind90.91.5e-28261642101
                    HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT....................... CS
   HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks....................... 74 
                    Fl k+y++++d++++e++sws+++nsfvv+++ efa+ +Lp+yFkh+nf+SF+RQLn+Y  +  +       +                       
  Jcr4S03304.20  26 FLLKTYDMVDDSSTDEIVSWSSSKNSFVVWNPPEFARVLLPTYFKHNNFSSFIRQLNTYWRRGGEMVVIYMIEesrafyakidckslldlhlsstc 121
                    9**********************************************************5443333332222244589999*************99 PP

                    ................XTTSEEEEESXXXXXXXXXXXXXXXXX CS
   HSF_DNA-bind  75 ................kekiweFkhksFkkgkkellekikrkk 101
                                    +++ weF+++ F k++k+ll++i+r+k
  Jcr4S03304.20 122 dglldscslilgfrkiDPEKWEFANEDFVKDQKHLLKNIHRRK 164
                    999999988887765449***********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.8E-4522163IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.6E-332284IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.36E-222285IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004477.4E-2726163IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-132649IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-136476IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-137789IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.6E-33133163IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF054985.0E-27666727IPR008801Rapid ALkalinization Factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 728 aa     Download sequence    Send to blast
MEAAPPSATN SGCVGGGGGG GGPAPFLLKT YDMVDDSSTD EIVSWSSSKN SFVVWNPPEF  60
ARVLLPTYFK HNNFSSFIRQ LNTYWRRGGE MVVIYMIEES RAFYAKIDCK SLLDLHLSST  120
CDGLLDSCSL ILGFRKIDPE KWEFANEDFV KDQKHLLKNI HRRKPIHSHS HPHGSLVDPE  180
RAAFDVEIDR LAREKATLEE SVVGSKHQRS AEKLQLEDLT QRVNSMEQRQ EKLLALLEKA  240
VQNPTFIEHL ARKIDSMDFS AYSKKRRLPQ VDHSKSNAEN SFVDNQSNSR SEFGNVIHQD  300
FSNKLRLELS PAVSDINLVS NSTQSSNEDM GSPQRKASGG DPKDTPPRTP CLLFASETFD  360
LSDTGTSYSY KVDPAFPRKL TTNKTLELHS LQPNLISNEE ADGHISCHLN LTLASSPLQA  420
NRSPYSARMA ELHQEFCKSP ESKLNDDGKE SNMLVTSKDR TGGNGDTTLS SSKEAPNNNQ  480
GPAAAPPRVN DVFWEQFLTE RPGSSENEEA SSNYRANPYD DKEDRRSSHV MLRNAKNWLL  540
LLFISYGLSL LSNDYIHFDV EEEDYVGIWY IFNNERVQPV EAKVESAISI GVSLPVPELL  600
KKLKKRKTTQ LYTTQPKKMS RTELYILALI FLHTHFAICN GVSVSGLNSL ENTEIDAVMR  660
RVDWLEEAEM ESEISRRVLL MQKYISYETL KRDMVPCAKP GASYYDCHAG EANPYSRGCE  720
VITRCRGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-1571631129Heat shock factor protein 1
5d5v_B3e-1571631129Heat shock factor protein 1
5d5v_D3e-1571631129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1600606KKLKKRK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012071084.10.0heat stress transcription factor A-5
RefseqXP_020534588.10.0heat stress transcription factor A-5
SwissprotQ94BZ51e-157HSFA5_ARATH; Heat stress transcription factor A-5
TrEMBLA0A067L5F40.0A0A067L5F4_JATCU; Uncharacterized protein
STRINGXP_002522803.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49613253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13980.11e-156HSF family protein
Publications ? help Back to Top
  1. Reňák D,Gibalová A,Solcová K,Honys D
    A new link between stress response and nucleolar function during pollen development in Arabidopsis mediated by AtREN1 protein.
    Plant Cell Environ., 2014. 37(3): p. 670-83
    [PMID:23961845]