PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S03314.20
Common NameJCGZ_01474
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family B3
Protein Properties Length: 88aa    MW: 10200.6 Da    PI: 9.3109
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S03314.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.82.6e-152811899
                   --HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
             B3 18 lpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                   +p +f++++++k  e  +l++e+   + W v+l++    + +r ++ +GW++F++ n Lk+gD++vF+l++++++ ++v++fr+
  Jcr4S03314.20  2 VPHNFVSKIQQKAVE-AKLQVEN---NLWHVNLNIyrHYNANRGLFCGGWRQFARGNSLKVGDICVFELIDDENAVFKVSIFRH 81
                   699999999755433.3555555...99*****654645555577888**********************9999999****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.324182IPR003340B3 DNA binding domain
PfamPF023621.3E-13281IPR003340B3 DNA binding domain
CDDcd100177.86E-17280No hitNo description
Gene3DG3DSA:2.40.330.102.1E-16280IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.24E-15280IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0014282IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 88 aa     Download sequence    Send to blast
HVPHNFVSKI QQKAVEAKLQ VENNLWHVNL NIYRHYNANR GLFCGGWRQF ARGNSLKVGD  60
ICVFELIDDE NAVFKVSIFR HVNQSLHA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021659119.18e-26B3 domain-containing transcription factor VRN1-like
TrEMBLA0A067LKV04e-56A0A067LKV0_JATCU; Uncharacterized protein
STRINGcassava4.1_030600m5e-22(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1608859
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-09B3 family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]