PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S03357.10
Common NameJCGZ_18287, LOC105641983
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family RAV
Protein Properties Length: 360aa    MW: 40084.2 Da    PI: 9.2073
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S03357.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2445.6e-1456104155
            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    s+ykGV   + +grW A+I++      ++r++lg+f  ++eAaka++ a+++++g
  Jcr4S03357.10  56 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAAKAYDIAAQRFRG 104
                    89****9888.8*********3.....5**********99*************98 PP
2B31047.7e-33189289196
                    EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                    f+k+ tpsdv+k++rlv+pk++ae+h     g+++++++ l +ed +g++W+++++y+++s++yvltkGW++Fvk+++Lk+gD+v F+++   +++
  Jcr4S03357.10 189 FEKAVTPSDVGKLNRLVIPKQHAEKHfplqsGSNSTKGVLLNFEDITGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFQRSTGPDKQ 284
                    89*****************************99999****************************************************87667776 PP

                    .EEEE CS
             B3  92 lvvkv 96 
                    l++ +
  Jcr4S03357.10 285 LYIDW 289
                    77665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.19E-2456111No hitNo description
PfamPF008478.6E-956104IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-1656113IPR016177DNA-binding domain
PROSITE profilePS5103219.90257112IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-1957113IPR001471AP2/ERF domain
SMARTSM003807.7E-2757118IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.104.0E-42183294IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.03E-32187283IPR015300DNA-binding pseudobarrel domain
CDDcd100172.15E-28188278No hitNo description
PROSITE profilePS5086314.212189293IPR003340B3 DNA binding domain
SMARTSM010194.1E-24189293IPR003340B3 DNA binding domain
PfamPF023621.4E-29189289IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MDGSCIDEST TTDSISLTPP TKSSPESPLC RVGSGTSVIL DSESGVEAES RKLPSSKYKG  60
VVPQPNGRWG AQIYEKHQRV WLGTFNEEDE AAKAYDIAAQ RFRGRDAIAN FKLEANETED  120
DDIETAFLNS HSKAEIVDML RKHTYNDELE QSKRNYRIDG QGKHKNHGGV NNVGLIASER  180
VLKAREQLFE KAVTPSDVGK LNRLVIPKQH AEKHFPLQSG SNSTKGVLLN FEDITGKVWR  240
FRYSYWNSSQ SYVLTKGWSR FVKEKNLKAG DIVSFQRSTG PDKQLYIDWK VRTSGSNQVV  300
CPMVQPVQMV RLFGVNIFKV AGNGNGGVEG VVGGCSGKRM REMDLLSLEY SKKQMVIGAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-6018629711121DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences. Functionally redundant with TEM2. {ECO:0000269|PubMed:18718758}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00024PBMTransfer from AT1G25560Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn. {ECO:0000269|PubMed:18718758}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012082031.10.0AP2/ERF and B3 domain-containing transcription factor RAV1
SwissprotQ9C6M51e-153RAVL1_ARATH; AP2/ERF and B3 domain-containing transcription repressor TEM1
TrEMBLA0A067JZG60.0A0A067JZG6_JATCU; Uncharacterized protein
STRINGcassava4.1_010157m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29203274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25560.11e-152RAV family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Choi D, et al.
    iNID: an analytical framework for identifying network models for interplays among developmental signaling in Arabidopsis.
    Mol Plant, 2014. 7(5): p. 792-813
    [PMID:24380880]
  3. Sgamma T,Jackson A,Muleo R,Thomas B,Massiah A
    TEMPRANILLO is a regulator of juvenility in plants.
    Sci Rep, 2014. 4: p. 3704
    [PMID:24424565]
  4. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  5. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]
  6. Marín-González E, et al.
    SHORT VEGETATIVE PHASE Up-Regulates TEMPRANILLO2 Floral Repressor at Low Ambient Temperatures.
    Plant Physiol., 2015. 169(2): p. 1214-24
    [PMID:26243615]
  7. Matías-Hernández L, et al.
    TEMPRANILLO Reveals the Mesophyll as Crucial for Epidermal Trichome Formation.
    Plant Physiol., 2016. 170(3): p. 1624-39
    [PMID:26802039]