PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S03390.40
Common NameJCGZ_22436, LOC105645043
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family MYB_related
Protein Properties Length: 79aa    MW: 9037.18 Da    PI: 9.9262
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S03390.40genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.53e-081054344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     +WT+   +l+ +a +++ ++   +W  +a+ +g ++++++++ ++
    Jcr4S03390.40 10 AWTPKQNKLFEKALALYDKDtpdRWLNVAKAVGGNKSPEEVRRHY 54
                     8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.82662IPR017884SANT domain
SMARTSM007171.2E-7760IPR001005SANT/Myb domain
SuperFamilySSF466892.34E-12966IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.0E-41064IPR009057Homeodomain-like
CDDcd001671.47E-51054No hitNo description
PfamPF002496.7E-71054IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 79 aa     Download sequence    Send to blast
MASNSLTSSA WTPKQNKLFE KALALYDKDT PDRWLNVAKA VGGNKSPEEV RRHYEILIKD  60
VREIESGRVP FPNYTSTRN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-31177176RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012085932.14e-53protein RADIALIS-like 3
SwissprotQ1A1731e-31RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A067K3A49e-52A0A067K3A4_JATCU; Uncharacterized protein
STRINGPOPTR_0005s12390.15e-41(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.15e-34RAD-like 6
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]