PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S03394.10
Common NameLOC105639404
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family NAC
Protein Properties Length: 402aa    MW: 45957.3 Da    PI: 7.4437
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S03394.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM161.23.9e-50411662128
            NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 
                    +pGfrFhPt+eelv +yL++kvegk++++ e i+ +d+y+++Pw+Lp+ ++ +ekew+f+++rd+ky++g+r+nr+t+sgyWkatg d+ + ++++
  Jcr4S03394.10  41 MPGFRFHPTEEELVEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPALAAIGEKEWFFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRTENS 135
                    79***************************.89***************8778899****************************************** PP

            NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                    + +glkktLvfy+g+apkg +t+W+m+eyrl
  Jcr4S03394.10 136 RSIGLKKTLVFYSGKAPKGIRTSWIMNEYRL 166
                    *****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.81E-5640186IPR003441NAC domain
PROSITE profilePS5100555.80440187IPR003441NAC domain
PfamPF023655.2E-2542166IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MAIAATMSLT TTNNSNSTNN TAATAVATTT KDDDHEHDMV MPGFRFHPTE EELVEFYLRR  60
KVEGKRFNVE LITFLDLYRY DPWELPALAA IGEKEWFFYV PRDRKYRNGD RPNRVTTSGY  120
WKATGADRMI RTENSRSIGL KKTLVFYSGK APKGIRTSWI MNEYRLPQHE TERYQKAEIS  180
LCRVYKRAGV EDHPSLPRAL PSRASSSRGT QSDKKQHQIS IERFQSQQIE MEKMSETDGS  240
SSSDVTTTLV LSKTNNNAYN PHIVPAISTS LGLPATMEEE EEIFLNQSRQ ACSLLSNNTN  300
LFAASSNPVD DLHRLVNYQQ ACITHHNQQQ QQQQQQPPYY TSHQHQHSSQ FSIIAPPQSQ  360
VAPALPLNML PNQLPAAFSE RLWEWNPITE ANRDFNVNNP FK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-564218719165NO APICAL MERISTEM PROTEIN
1ut4_B3e-564218719165NO APICAL MERISTEM PROTEIN
1ut7_A3e-564218719165NO APICAL MERISTEM PROTEIN
1ut7_B3e-564218719165NO APICAL MERISTEM PROTEIN
3swm_A5e-564218722168NAC domain-containing protein 19
3swm_B5e-564218722168NAC domain-containing protein 19
3swm_C5e-564218722168NAC domain-containing protein 19
3swm_D5e-564218722168NAC domain-containing protein 19
3swp_A5e-564218722168NAC domain-containing protein 19
3swp_B5e-564218722168NAC domain-containing protein 19
3swp_C5e-564218722168NAC domain-containing protein 19
3swp_D5e-564218722168NAC domain-containing protein 19
4dul_A3e-564218719165NAC domain-containing protein 19
4dul_B3e-564218719165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269|PubMed:17653269}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00257DAPTransfer from AT2G02450Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269|PubMed:17653269}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC7753140.0KC775314.1 Jatropha curcas NAC transcription factor 036 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012078844.10.0NAC domain-containing protein 35-like
SwissprotQ9ZVP81e-120NAC35_ARATH; NAC domain-containing protein 35
TrEMBLR4N5L60.0R4N5L6_JATCU; NAC transcription factor 036
STRINGcassava4.1_009166m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72033146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.11e-107NAC domain containing protein 35
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Wu Z, et al.
    Genome-Wide Analysis of the NAC Gene Family in Physic Nut (Jatropha curcas L.).
    PLoS ONE, 2015. 10(6): p. e0131890
    [PMID:26125188]
  3. Okajima K
    Molecular mechanism of phototropin light signaling.
    J. Plant Res., 2016. 129(2): p. 149-57
    [PMID:26815763]
  4. Nakasone Y,Ohshima M,Okajima K,Tokutomi S,Terazima M
    Photoreaction Dynamics of LOV1 and LOV2 of Phototropin from Chlamydomonas reinhardtii.
    J Phys Chem B, 2018. 122(6): p. 1801-1815
    [PMID:29355019]