PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S03474.20
Common NameJCGZ_05830, LOC105650711
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family ERF
Protein Properties Length: 246aa    MW: 26721.7 Da    PI: 9.632
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S03474.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.99.3e-174392255
            AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                   ++ GVr+++ +grWvAeI+d s   ++ r +lg+f++aeeAa a++ a++ l+g
  Jcr4S03474.20 43 RFLGVRQRP-SGRWVAEIKDSS---QKLRLWLGTFDSAEEAAMAYDSAARLLRG 92
                   577******.7*********42...36***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.71E-314299No hitNo description
PROSITE profilePS5103219.71743100IPR001471AP2/ERF domain
SMARTSM003801.1E-3443106IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-2743100IPR001471AP2/ERF domain
PRINTSPR003672.6E-74455IPR001471AP2/ERF domain
SuperFamilySSF541712.81E-1944101IPR016177DNA-binding domain
PfamPF008473.9E-114692IPR001471AP2/ERF domain
PRINTSPR003672.6E-76682IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MDKKESSKVD LFQENPLHQA NISDQIKRIR VPPRCNKNGA LKRFLGVRQR PSGRWVAEIK  60
DSSQKLRLWL GTFDSAEEAA MAYDSAARLL RGRNAKTNFV YEKNNGSGII STHQESKLLG  120
KNPRLHQLLQ LAIIKNHARS SSSSSSSSSL ASASDNNDKI PWMGQDFGTM VEDTIICSSS  180
YDQDCYGNSS TSSKICGLSS FGTAKVYSSV IIAPSFSASS SSSSSSSSSP HPLCNQSGDE  240
NKSKEG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-17431091481Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012093045.11e-159pathogenesis-related genes transcriptional activator PTI5
TrEMBLA0A067J8H51e-158A0A067J8H5_JATCU; Uncharacterized protein
STRINGXP_002512003.15e-65(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF123492734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.11e-17related to AP2 11
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]