PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S03518.10
Common NameJCGZ_16506
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family ARF
Protein Properties Length: 707aa    MW: 77652 Da    PI: 7.0224
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S03518.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.92e-23123224199
                    EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                    f k+lt+sd+++ g +++p+ +ae++         ++ +  t+  +d +g++W++++iyr++++r++lt+GW+ Fv+ ++L +gD++vF +   ++
  Jcr4S03518.10 123 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFLR--ADN 214
                    89****************************996555555..89***********************************************3..477 PP

                    E..EEEEE-S CS
             B3  90 felvvkvfrk 99 
                    + l+v+++r+
  Jcr4S03518.10 215 GDLCVGIRRA 224
                    888****996 PP
2Auxin_resp115.25.8e-38293376183
     Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                    aa+ a+++++FevvY+Prast+eF+vk++ v++al+++++ GmRfkmafetedss++++ +Gt+++v+ +dp+rWp+S+Wr+L+
  Jcr4S03518.10 293 AASLAANGKPFEVVYYPRASTPEFCVKASLVKAALQIRWCSGMRFKMAFETEDSSRISWfMGTISSVQVADPIRWPDSPWRLLQ 376
                    68899*****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.62E-29117229IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.6E-37117232IPR015300DNA-binding pseudobarrel domain
CDDcd100172.63E-21122223No hitNo description
SMARTSM010192.4E-21123225IPR003340B3 DNA binding domain
PROSITE profilePS5086313.084123225IPR003340B3 DNA binding domain
PfamPF023621.1E-21123224IPR003340B3 DNA binding domain
PfamPF065072.4E-33293376IPR010525Auxin response factor
PROSITE profilePS5174519.926621704IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 707 aa     Download sequence    Send to blast
MITFMEAKDR VKEVDKCLDS QLWHACAGGM VQMPAMNSKV FYFPQGHAEH ASGSIDFRTL  60
PRVPPYILCK ILAIKFMADP ETDEVYAKIK LVPVSGNEAM EDEQEGVING GGEGQESNKP  120
ASFAKTLTQS DANNGGGFSV PRYCAETIFP RLDYSADPPV QTILAKDVHG ETWKFRHIYR  180
GTPRRHLLTT GWSTFVNHKK LVAGDSIVFL RADNGDLCVG IRRAKRGIGG SPESSWNPAG  240
GNCVMPYGGF TGFLREEDNK IMRNGTSGNG NGSSANGSSI SRGKVKSEAV IEAASLAANG  300
KPFEVVYYPR ASTPEFCVKA SLVKAALQIR WCSGMRFKMA FETEDSSRIS WFMGTISSVQ  360
VADPIRWPDS PWRLLQVTWD EPDLLQNVKR VSPWLVELVS NMPTIHLSPF SPPRKKLRLP  420
QHPDFPLDGQ FPIPTFSGNL LGPSSPFGCL PDNTTPAGMQ GARHAHYGLS LSDLHLNKLH  480
TGLIPAGFPP LLDHTATHTR TSNGPIIQKP SMSESVSCVL TMSHASTQPS KKRNDAKTPH  540
LVLFGQPILT EQQISLSCSG DAVSPVLTGN SSSEGNLNKT TNFSDGSGSA FHQQGLLERS  600
SCEGFQWYKD NRQENEMSLE TGICKVFMES EDVGRTLDLS LLRSYEELYR KLADMFGIEN  660
SETLNNVLYR DITGSVKHIG DEPFSDFMKT ARRLTILMDS SSDNVGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A4e-81839741388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012082361.10.0auxin response factor 18
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A067JYZ20.0A0A067JYZ2_JATCU; Auxin response factor
STRINGcassava4.1_002684m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63734138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]
  3. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]