PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S03520.30
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family E2F/DP
Protein Properties Length: 552aa    MW: 61073.6 Da    PI: 7.1867
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S03520.30genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP51.91.3e-162533073271
        E2F_TDP  32 keLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                    +eLv+e                d+kn+rRR+YD+lNVL+al++i+k +k+ei+wkg
  Jcr4S03520.30 253 DELVAEfadpsnsvsspdqqqyDEKNIRRRVYDALNVLMALDIISK-DKKEIQWKG 307
                    67777777788888899999999***********************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.8E-1399157IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023195.0E-16103307IPR003316E2F/DP family, winged-helix DNA-binding domain
SMARTSM013724.4E-12232307IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.25E-12252308IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.108.4E-26253313IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144583.22E-30312489IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440747.32E-14314394No hitNo description
SMARTSM011383.7E-45314550IPR014889Transcription factor DP, C-terminal
PfamPF087811.7E-6356391IPR014889Transcription factor DP, C-terminal
PfamPF087811.4E-15450522IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440749.68E-16451501No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 552 aa     Download sequence    Send to blast
MVTGGSHQDD VDKNPATIAA VSRGGTRSWG NTTVSGQSVS TSGSVGSPSS RSEQAMATPA  60
SDSTFLRLNH LDIHADDAAT QDAAANKKKK RGQRAAGADK SGRGLRQFSM KVCYRFLDEF  120
PLIFCFNYFM SFPVCEKVES KGTTTYNELC RGILVLKGAS ASGFRTRRQI LEIKLDLGLL  180
LSDSRGCIHL EVQLSDILMV MECNVAGKAC HDIKIVEVKE HFQGLLEFDI TNYFRALTLH  240
VIRINAVFLF YLDELVAEFA DPSNSVSSPD QQQYDEKNIR RRVYDALNVL MALDIISKDK  300
KEIQWKGLPR TSLSDIEELK AERLALRNRI EKKSAYLQEL EEQLIRVLFI VFLSLIKYVG  360
LQNLINRNEQ LYSSGNAPSG GVSLPFILVQ NGRNVSKFII LGSYISGDGV GEGIILELGN  420
ANLHPTTNVG TGKVGLVLGD SLVWKFASRR TRPHATVEVE ISEDMQLVHF DFNSTPFELH  480
DDNYVLKAMK FCERPQSDDM APNIATDGGE GSSMSNMYQQ QIHPSPGTST PVRPPTSPPI  540
PGIIKARVKH EH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B1e-172533123693PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012082421.11e-134transcription factor-like protein DPB isoform X2
SwissprotQ9FNY21e-77DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A067JYW61e-132A0A067JYW6_JATCU; Uncharacterized protein
STRINGcassava4.1_010769m1e-121(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33213366
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.26e-80Transcription factor DP