PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S03651.20
Common NameJCGZ_12782, LOC105637330
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family NAC
Protein Properties Length: 252aa    MW: 29655.7 Da    PI: 8.045
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S03651.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM78.51.5e-24151471128
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.........leleevikevdiykvePwdLp.kkvka.eekewyfFskrdkkyatgkrknratksgyWka 85 
                    lp G++F Ptd+el+ +yLk k+ g++          +l ++i+++d+++++P +Lp   +++ + +ewyfFs+r+k        +  tk+g+ + 
  Jcr4S03651.20  15 LPFGYKFCPTDSELILFYLKSKILGQDpivkkksldQDLIDIIPTIDVFSSNPDQLPvGDYEHgSCSEWYFFSNRRKG-------KILTKDGFYRV 103
                    689***********************9877766655444559***************5444331455******99764.......348999****9 PP

            NAM  86 tgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                    + +++  +sk k+el+g  + L fy+gr  kg+k++W + eyr+
  Jcr4S03651.20 104 SSRNHVYMSKhKKELIGFVRKLDFYHGRPDKGSKSQWSIYEYRV 147
                    998877777767788***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.89E-2710174IPR003441NAC domain
PROSITE profilePS5100531.19115176IPR003441NAC domain
PfamPF023658.0E-1616147IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MEQVAVPSGY ERVVLPFGYK FCPTDSELIL FYLKSKILGQ DPIVKKKSLD QDLIDIIPTI  60
DVFSSNPDQL PVGDYEHGSC SEWYFFSNRR KGKILTKDGF YRVSSRNHVY MSKHKKELIG  120
FVRKLDFYHG RPDKGSKSQW SIYEYRVNPE WLQVNEMDHA TREKILNVVA CKVIYRQPPK  180
PEGTFELLGV RDVELFIKNQ EMDNVELELN EKDQKENENE NVQLELKTSR NERDRKGKEK  240
DQNEKGNERI KK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC7753301e-152KC775330.1 Jatropha curcas NAC transcription factor 052 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012076157.10.0NAC domain-containing protein 41
TrEMBLR4N7R20.0R4N7R2_JATCU; NAC transcription factor 052
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14452718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46590.13e-18NAC domain containing protein 96
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]
  2. Wu Z, et al.
    Genome-Wide Analysis of the NAC Gene Family in Physic Nut (Jatropha curcas L.).
    PLoS ONE, 2015. 10(6): p. e0131890
    [PMID:26125188]