PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S03656.30
Common NameJCGZ_20054, LOC105650910
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family ARF
Protein Properties Length: 661aa    MW: 72622 Da    PI: 6.3053
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S03656.30genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.72.3e-23128229199
                    EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                    f k+lt+sd+++ g +++p+ +ae++        +++ +  t+  +d +g+ W++++iyr++++r++lt+GW++Fv++++L +gD++vF +   ++
  Jcr4S03656.30 128 FAKTLTQSDANNGGGFSVPRYCAETIfprldysAEPPVQ--TILAKDVHGEIWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIVFLR--ADN 219
                    89****************************986445444..8999*********************************************3..478 PP

                    E..EEEEE-S CS
             B3  90 felvvkvfrk 99 
                    + l+v+++r+
  Jcr4S03656.30 220 GDLCVGIRRA 229
                    888****996 PP
2Auxin_resp114.87.5e-38258341183
     Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                    aa+ a+++++F+ vY+Prast+eF+vk++ v++a+++++++GmRfkmafetedss++++ +Gt+++v+ +dp+rWp S+Wr+L+
  Jcr4S03656.30 258 AATLAANGQPFDAVYYPRASTPEFCVKASAVRAAMQIQWCPGMRFKMAFETEDSSRISWfMGTISSVQVADPIRWPSSPWRLLQ 341
                    68899*****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-37119232IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.44E-29121232IPR015300DNA-binding pseudobarrel domain
CDDcd100178.85E-22127228No hitNo description
PROSITE profilePS5086313.126128230IPR003340B3 DNA binding domain
PfamPF023621.5E-21128229IPR003340B3 DNA binding domain
SMARTSM010193.6E-22128230IPR003340B3 DNA binding domain
PfamPF065071.5E-32258341IPR010525Auxin response factor
PROSITE profilePS5174516.842575655IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009734Biological Processauxin-activated signaling pathway
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 661 aa     Download sequence    Send to blast
MIRDFGVMKS HREQLRVVAE KCLDSQLWHA CAGGMVQMPS LNSKVFYFPQ GHVEHAQGNV  60
DFGHCKIPAM IPCKVSAVKY LADPETDEVF AKIGLIPLSD RDLVFLEADN DDGSFDGNAS  120
SQEKPASFAK TLTQSDANNG GGFSVPRYCA ETIFPRLDYS AEPPVQTILA KDVHGEIWKF  180
RHIYRGTPRR HLLTTGWSNF VNQKKLVAGD SIVFLRADNG DLCVGIRRAK RGIGGGNECP  240
SGWNSFGGKV RAESVIQAAT LAANGQPFDA VYYPRASTPE FCVKASAVRA AMQIQWCPGM  300
RFKMAFETED SSRISWFMGT ISSVQVADPI RWPSSPWRLL QVAWDEPDLL QNVKCVSPWL  360
VELVSNMPAI HLSPFSPPRK KLRLPQPPDF PLLGHFPMPS FTSNPLNSNS PLCCVSDNIP  420
AGIQGARHAQ YGLSSADLHF NKLQSSPFPV GFQQLDCAAQ FSRIPSCKVL GNTENNDDIS  480
CLLTMGNPTT ASSKENSETK TPHILLFGQL IFTDQQSFQS CSGDTNGNSS SDGNPEKMIN  540
LSDGPVSAFH QAIPLENSSD EGSPWYQKTD LSLETGHCKV FRESDDLGRT LDLSVFGSYE  600
ELYGKLANMF GVKRSDMFSS VLYRDAAGAT KHAGDEPFSE FLKTARRLTI LTDSGSDNIE  660
T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-802336251388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00461DAPTransfer from AT4G30080Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012093265.10.0auxin response factor 16
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A067LJC00.0A0A067LJC0_JATCU; Auxin response factor
STRINGcassava4.1_002980m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63734138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]
  3. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]