PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S03964.20
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family HSF
Protein Properties Length: 578aa    MW: 64164.2 Da    PI: 4.657
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S03964.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind91.21.2e-281152422102
                    HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT....................... CS
   HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks....................... 74 
                    Fl+k+y++++d++l+ +isw ++g+sfvv+++ efa+ +Lp+ Fkh+nf+SFvRQLn+Y   +   +e                            
  Jcr4S03964.20 115 FLSKTYDLVNDRTLDPIISWGTTGESFVVWEPLEFARIILPRNFKHNNFSSFVRQLNTYVGDSYLVSEVL--Ifipptkrhssplsmywsgelllv 208
                    9**********************************************************65555444433..134667778889999999999888 PP

                    ......XTTSEEEEESXXXXXXXXXXXXXXXXXX CS
   HSF_DNA-bind  75 ......kekiweFkhksFkkgkkellekikrkks 102
                          +++ weF+++ F++gk++ll++i+r+ks
  Jcr4S03964.20 209 qgfrkiDSDKWEFANEAFRRGKRHLLKNIQRRKS 242
                    77765449************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467858.43E-28111180IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.3E-42111240IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.0E-32112173IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004476.6E-27115240IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-11115138IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-11153165IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-11166178IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467858.43E-28207240IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.0E-32210240IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 578 aa     Download sequence    Send to blast
MNPEDEKSSQ SPHKRSDSSS ASEHETTPSL LQPVMGSQGF PSGSLTMEDM NFAGSPISAS  60
FPSPFNGIGS ILFYGTIAPI GPSAGGDADD DAPEEDVGGM PRPLASLQEN PVPPFLSKTY  120
DLVNDRTLDP IISWGTTGES FVVWEPLEFA RIILPRNFKH NNFSSFVRQL NTYVGDSYLV  180
SEVLIFIPPT KRHSSPLSMY WSGELLLVQG FRKIDSDKWE FANEAFRRGK RHLLKNIQRR  240
KSPQTQFAGS YTGPSTEAGK SELQSEIERL RQERSTMMQE VVELQQQQRG AVHHMEAVNQ  300
RLKTAEQRQK LMVAFLAKLF QNPGFLARLR QNKERAVIGS SRMNRKFVKH QNQQHGPESP  360
IEGQIANYRS ELGNLPLSAE VPDINPAPIE QSPDYTLQGM VEMGEDAECR FEVENVASHN  420
FVISDELQAA QGYINSQEQF GEGTSNFGSE DPQFKGKIVA SPQQEVDPEY YVSFPVDLAA  480
EKNFPEFSSG IDSIVRQEEV WSMGFDSQAG MSSSSHELWG NLVSYDVLEF GTSGGFSDIW  540
DLGSVQAAGS SGVHKWPVDE PKSHAGQPED DRSKNIDP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-179824010129Heat shock factor protein 1
5d5v_B3e-179824010129Heat shock factor protein 1
5d5v_D3e-179824010129Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012072956.10.0heat stress transcription factor A-2c
TrEMBLA0A067KYG20.0A0A067KYG2_JATCU; Uncharacterized protein
STRINGcassava4.1_028748m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87823038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03720.15e-87heat shock transcription factor A3