PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S04016.10

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

LSD

Protein Properties

Length: 161aa MW: 17228.1 Da PI: 7.7051

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S04016.10	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	42.1	1.5e-13	30	54	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL YP GA+sV+Ca+C++V Jcr4S04016.10 30 CSGCRNLLLYPVGATSVCCAVCNAV 54 ************************9 PP
2	zf-LSD1	46.3	6.9e-15	69	93	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y rGA+sV+C++C+t+ Jcr4S04016.10 69 CGGCHTLLMYIRGATSVQCSCCHTI 93 ***********************97 PP
3	zf-LSD1	36.1	1.1e-11	107	130	1	24
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 Cg+Cr lL+Y +GA+sV+Ca+C++ Jcr4S04016.10 107 CGNCRMLLMYQYGARSVKCAVCNF 130 **********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.90.10.10	4.9E-4	19	133	No hit	No description
TIGRFAMs	TIGR01053	1.2E-12	27	57	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.7E-10	30	54	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	1.7E-14	66	95	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.1E-12	69	93	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	2.0E-10	104	129	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	4.5E-12	107	129	IPR005735	Zinc finger, LSD1-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009814	Biological Process	defense response, incompatible interaction
GO:0034051	Biological Process	negative regulation of plant-type hypersensitive response
GO:0034052	Biological Process	positive regulation of plant-type hypersensitive response
GO:0045595	Biological Process	regulation of cell differentiation
GO:2000121	Biological Process	regulation of removal of superoxide radicals

Sequence ? help Back to Top
Protein Sequence Length: 161 aa Download sequence Send to blast
MPVPLAPYPT PPAATYTPAP ANGAQSQLVC SGCRNLLLYP VGATSVCCAV CNAVTAVPPP 60 GTEMAQLICG GCHTLLMYIR GATSVQCSCC HTINLALEAN QVAHVNCGNC RMLLMYQYGA 120 RSVKCAVCNF CHIHWGQLQF YHCTFMPQQA QLSRNSTAEV E

Functional Description ? help Back to Top
Source	Description
UniProt	Negative regulator of programmed cell death and hypersensitive response (HR). Positive regulator of callus differentiation. {ECO:0000269\|PubMed:15915636}.
UniProt	Positive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269\|PubMed:12732715}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By light. Down-regulated by dark. {ECO:0000269\|PubMed:15915636}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012075917.1	4e-89	protein LOL1
Refseq	XP_012075918.1	4e-89	protein LOL1
Refseq	XP_012075919.1	4e-89	protein LOL1
Swissprot	Q0J7V9	3e-71	LSD1_ORYSJ; Protein LSD1
Swissprot	Q93ZB1	1e-71	LOL1_ARATH; Protein LOL1
TrEMBL	A0A067KEI2	9e-88	A0A067KEI2_JATCU; Uncharacterized protein
STRING	cassava4.1_018557m	8e-80	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8187	33	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32540.3	6e-58	lsd one like 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]