PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S04022.30
Common NameJCGZ_03738, LOC105649248
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family MYB
Protein Properties Length: 242aa    MW: 27893.2 Da    PI: 5.0505
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S04022.30genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.38.7e-141461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W+ eEd++l  ++ + G  +W+  ++  g+ R++k+c++rw +yl
    Jcr4S04022.30 14 KGAWSREEDDKLRAYIMKRGHCNWRELPKFAGLSRCGKSCRLRWVNYL 61
                     79********************************************97 PP
2Myb_DNA-binding56.37.4e-1868110246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g++++eE+ l+++++++lG++ W++Ia +++ gRt++++k++w++
    Jcr4S04022.30  68 GNFSEEEENLIIQLHQELGNK-WSRIAMKLP-GRTDNEIKNHWHT 110
                      89*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.915961IPR017930Myb domain
SuperFamilySSF466891.05E-2911108IPR009057Homeodomain-like
SMARTSM007171.1E-101363IPR001005SANT/Myb domain
PfamPF002491.6E-121461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-211568IPR009057Homeodomain-like
CDDcd001672.40E-81661No hitNo description
PROSITE profilePS5129427.35962116IPR017930Myb domain
SMARTSM007177.8E-1766114IPR001005SANT/Myb domain
PfamPF002492.9E-1668110IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2569114IPR009057Homeodomain-like
CDDcd001671.21E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MVRTASVDKN GLKKGAWSRE EDDKLRAYIM KRGHCNWREL PKFAGLSRCG KSCRLRWVNY  60
LRPGVKHGNF SEEEENLIIQ LHQELGNKWS RIAMKLPGRT DNEIKNHWHT RLKKLLLEQT  120
QVATEQVKEQ SSEIPPSQNI EAESVDIAVT PSLPIILESS PLSNEISDYS SVQTSSNCVA  180
EDAHSFTSMM GIFEETGEDF WTAPFVEDHI YNQDFYASSY SLYYDDNMDF IHQVMQELPD  240
NN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-251211425126MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds DNA to the AC cis-elements 5'-ACCTACC-3', 5'-ACCAACC-3' and 5'-ACCTAAC-3' of promoters and specifically activates lignin biosynthetic genes during secondary wall formation mediated by SND1. {ECO:0000269|PubMed:19122102}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by light (PubMed:9839469). Regulated by the SND1 close homologs NST1, NST2, VND6, and VND7 and their downstream targets MYB46 and MYB83 (PubMed:19122102, PubMed:22197883). {ECO:0000269|PubMed:19122102, ECO:0000269|PubMed:22197883, ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0347060.0KM034706.1 Jatropha curcas clone JcMYB086 MYB family protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012091229.10.0transcription factor MYB114
SwissprotQ9SA474e-52MYB58_ARATH; Transcription factor MYB58
TrEMBLA0A067JNK20.0A0A067JNK2_JATCU; MYB family protein
STRINGcassava4.1_023393m1e-114(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.26e-55myb domain protein 9
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]
  2. Fernández-Pérez F,Vivar T,Pomar F,Pedreño MA,Novo-Uzal E
    Peroxidase 4 is involved in syringyl lignin formation in Arabidopsis thaliana.
    J. Plant Physiol., 2015. 175: p. 86-94
    [PMID:25506770]
  3. Noda S, et al.
    The expression of a rice secondary wall-specific cellulose synthase gene, OsCesA7, is directly regulated by a rice transcription factor, OsMYB58/63.
    Planta, 2015. 242(3): p. 589-600
    [PMID:26070439]
  4. Takeuchi M,Kegasa T,Watanabe A,Tamura M,Tsutsumi Y
    Expression analysis of transporter genes for screening candidate monolignol transporters using Arabidopsis thaliana cell suspensions during tracheary element differentiation.
    J. Plant Res., 2018. 131(2): p. 297-305
    [PMID:28921082]