PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S04091.20
Common NameJCGZ_00205, LOC105629739
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family B3
Protein Properties Length: 148aa    MW: 17272.1 Da    PI: 10.5075
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S04091.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.41.4e-14291191396
                    TT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEE CS
             B3  13 sgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkv 96 
                    +++++ p +f+++    +++ e++ ++t  d++g++W+++l++   +k+s+ ++  + W+ Fvk  gL++gD v+F+ +++   ++  ++ 
  Jcr4S04091.20  29 EHQFIAPSDFLKKLadlDENGESKEKITSFDRDGKEWTFRLSIrktEKYSKPTLTPASWRPFVKHFGLRDGDAVIFYIIRHdGARKIQIRG 119
                    456899999*99999994444566689999***********985555555558888*********************99765666555554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.4E-1415111IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.84E-1217110IPR015300DNA-binding pseudobarrel domain
CDDcd100171.39E-1117118No hitNo description
SMARTSM010196.8E-519121IPR003340B3 DNA binding domain
PfamPF023623.5E-1129117IPR003340B3 DNA binding domain
PROSITE profilePS5086310.05235121IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MANTKLLPEI KSDSIYKLCE KPLRKTDLEH QFIAPSDFLK KLADLDENGE SKEKITSFDR  60
DGKEWTFRLS IRKTEKYSKP TLTPASWRPF VKHFGLRDGD AVIFYIIRHD GARKIQIRGL  120
RKIIFLGKPT WKEVKKVENQ ALTSHSRV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021664346.15e-37uncharacterized protein LOC110653034
TrEMBLA0A067L5981e-104A0A067L598_JATCU; Uncharacterized protein
STRINGcassava4.1_030218m8e-38(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15290312
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]