PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S04122.10
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family MYB
Protein Properties Length: 210aa    MW: 24142.3 Da    PI: 7.5059
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S04122.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.26.7e-171259148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+ Ed+ll  +++ +G g W+ ++++ g++R++k+c++rw++yl
    Jcr4S04122.10 12 KGAWTPAEDDLLRSCIQIHGEGKWHEVPSKAGLNRCRKSCRLRWLNYL 59
                     79********************************************97 PP
2Myb_DNA-binding46.87e-1565110148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      r ++T +E +l ++++++lG++ W++Ia +++ gRt++++k++w++++
    Jcr4S04122.10  65 REKFTSDEIDLMARLHNLLGNR-WSLIAGRLP-GRTENDVKNFWNTHM 110
                      789*******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.262763IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.6E-221062IPR009057Homeodomain-like
SMARTSM007172.0E-141161IPR001005SANT/Myb domain
SuperFamilySSF466897.11E-2711106IPR009057Homeodomain-like
PfamPF002498.0E-161259IPR001005SANT/Myb domain
CDDcd001675.35E-101459No hitNo description
Gene3DG3DSA:1.10.10.604.0E-2263114IPR009057Homeodomain-like
SMARTSM007171.4E-1264112IPR001005SANT/Myb domain
PROSITE profilePS5129415.23264114IPR017930Myb domain
PfamPF002493.7E-1365109IPR001005SANT/Myb domain
CDDcd001671.43E-867110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MESPLTDGVV RKGAWTPAED DLLRSCIQIH GEGKWHEVPS KAGLNRCRKS CRLRWLNYLK  60
PDIKREKFTS DEIDLMARLH NLLGNRWSLI AGRLPGRTEN DVKNFWNTHM RKELKPSNPH  120
CEEDDEKGKT VKIIKPRPCK ISKDISLFTA TAKDKDHRQN DNGSDNNDYG KGESAPTFFE  180
GESTGKENEW WRIIFDGIEM DMGIMGFPDV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A5e-21121144105MYB PROTO-ONCOGENE PROTEIN
1h8a_C7e-211211427128MYB TRANSFORMING PROTEIN
1mse_C5e-21121144105C-Myb DNA-Binding Domain
1msf_C5e-21121144105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0346951e-143KM034695.1 Jatropha curcas clone JcMYB075 MYB family protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012080503.11e-132transcription factor MYB90 isoform X2
SwissprotQ9FNV97e-52MY113_ARATH; Transcription factor MYB113
TrEMBLA0A097HUP71e-131A0A097HUP7_JATCU; MYB family protein
STRINGXP_006482384.14e-61(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.13e-54myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]