PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S04149.80
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family bHLH
Protein Properties Length: 451aa    MW: 51209.1 Da    PI: 10.3636
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S04149.80genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.41.6e-15270317454
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     h++ ErrRR++iN++fe Lr+llP+    p+ K +Ka++L ++ eY+ sL
  Jcr4S04149.80 270 HHKISERRRREKINESFEALRKLLPPE---PKDKKDKASVLNRTSEYLTSL 317
                    69************************9...9*****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.28E-13266322No hitNo description
PROSITE profilePS5088816.171266317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-17267337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-17270335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.7E-13270317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.3E-15272323IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MASNSFALST YISRVPGIAF VNNQPYIDLN ESELGRMASV AVQRQFYQEA RIKNAVFMGC  60
RSGEIEMGWS NVQMNMENTM RNWFSEDIPQ RSPLTEFSQP IDPSRLSSSS SSLRSLSKDS  120
PKRSPFLFNI PTTSHISETP QDPTLQPMPT TSTAIQQQVV LQSLHPIQAT TAIPVQYSLQ  180
SLQAIPSATS ATLHQVMHAF ALARNIQFSN TRKATAFKKY VSLTTTTTAT RLTGLRRQSM  240
LKRAFTYYRN LNIERREHMQ ASRPTSTQIH HKISERRRRE KINESFEALR KLLPPEPKDK  300
KDKASVLNRT SEYLTSLKVQ VAELIQRNQK LEAQVLVPVR EGTEEVSESS NERVEVRVAR  360
VSETTSEEER TIDLQIFVRG DSANLSNIVI RILEFLKQHR NVNLMSVEAT ARTTESRSLN  420
RVILRLRIEG NGWDESAFQE AVRSVVADLA H
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1118123DSPKRS
2274279ERRRRE
3275280RRRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020536620.10.0putative transcription factor bHLH041
TrEMBLA0A067KNI50.0A0A067KNI5_JATCU; Uncharacterized protein
STRINGcassava4.1_026569m1e-140(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41503354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.12e-47bHLH family protein