PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S04199.10

Common Name

JCGZ_04578

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

M-type_MADS

Protein Properties

Length: 187aa MW: 21483.5 Da PI: 9.1553

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S04199.10	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	63.9	1.7e-20	2	48	1	47
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 krien+ r +tfskRr gi KKA+EL +LC+aeva+++fs+ gk + Jcr4S04199.10 2 KRIENEDDRLITFSKRRSGIYKKASELVTLCGAEVALLVFSPAGKPF 48 79*****************************************9855 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55455	6.41E-24	1	70	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	22.862	1	54	IPR002100	Transcription factor, MADS-box
SMART	SM00432	4.4E-22	1	53	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	9.7E-24	3	50	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.0E-10	16	31	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.0E-10	31	52	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 187 aa Download sequence Send to blast
MKRIENEDDR LITFSKRRSG IYKKASELVT LCGAEVALLV FSPAGKPFSF GHPSLESVVR 60 RFLGKSSSND NTHPLVEAHR RMRINELNLQ HNEVLSQLEA DKQRGNMLKM MVKGKTRQGW 120 WDTPIDELNL QELQQMHAKL EELHSNLCKS VSAVSFRINN PLFASDIASE KESFSFLHGH 180 GYEHRYF

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012072479.1	1e-139	agamous-like MADS-box protein AGL61
TrEMBL	A0A067L0B4	1e-137	A0A067L0B4_JATCU; Uncharacterized protein
STRING	cassava4.1_025366m	3e-78	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF128	33	331

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24840.1	3e-41	AGAMOUS-like 61

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]