PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S04298.10

Common Name

JCGZ_12763

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

C2H2

Protein Properties

Length: 268aa MW: 30204.2 Da PI: 4.6965

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S04298.10	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	20.2	1.6e-06	34	56	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + Cp+C+k F+++ +L+rH++ H Jcr4S04298.10 34 FHCPHCSKGFPSSQSLRRHQKAH 56 78*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	5.38E-6	33	61	No hit	No description
Pfam	PF13912	5.7E-6	34	59	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	2.6E-5	34	60	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	13.235	34	61	IPR007087	Zinc finger, C2H2
SMART	SM00355	6.0E-4	34	56	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	36	56	IPR007087	Zinc finger, C2H2
SuperFamily	SSF48371	1.06E-5	202	250	IPR016024	Armadillo-type fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence Send to blast
MQSQSQSQSQ ANSCESSNSP SLRNPSCLVS LLSFHCPHCS KGFPSSQSLR RHQKAHRKER 60 NALRKRLIQY RKLKAQARAR GKGKSPLFPS ARVLKPRPIR VAPIPLPPSE DGIRIPQNAH 120 FGFRFDMLSC PSVSNVIENN SEIASLSELQ KFLAFQSFLA SPNFVSPFSA ANMVSGQQIN 180 LNNECHVKIP DKEKVTMEWE ADYEKDEEDD DDDTDTDTDT DDEDDDDDEA DYDEDEDGDE 240 GDHAWTDNGD KGKEKVTFEK QLDLTLKL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A067KQA5	0.0	A0A067KQA5_JATCU; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF17044	5	5

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]