PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S04316.30

Common Name

JCGZ_17772

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

YABBY

Protein Properties

Length: 216aa MW: 24487.7 Da PI: 6.5031

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S04316.30	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	208.1	3.2e-64	6	170	2	169
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas....qllaaeshldeslkeelleelkveeenlksnvekeesas 93 ++f+ +eq+CyvqC+fC+til+vsvP +sl++vvtvrCGhCtsllsvn+ k s qlla+ sh + ++e+ e v + k+ +++++s++ Jcr4S04316.30 6 HLFDLPEQICYVQCGFCDTILLVSVPCSSLSMVVTVRCGHCTSLLSVNMLKVSfvplQLLASLSH---DQQKEVNPEAAVGLR--KTLDIQRSSSM 96 7899******************************************99888555555555555...444555555444433..33444444455 PP YABBY 94 tsvsseklsenedeevprvppvirPPekrqrvPsaynrfi.keeiqrikasnPdishreafsaaaknWahfPkihfg 169 s ++l+e+++ p+ +++PPekrqr+Psaynrfi +eei+r+k++nP+++h+eafs+aaknWa fP+ih++ Jcr4S04316.30 97 VAYSDHELEEDKN---PENRVINKPPEKRQRAPSAYNRFInREEIRRLKTENPNMAHKEAFSTAAKNWANFPPIHYK 170 5555545544444...4444689*************669******************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.6E-62	11	170	IPR006780	YABBY protein
SuperFamily	SSF47095	4.06E-6	113	166	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	2.1E-4	117	165	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:0048481	Biological Process	plant ovule development
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence Send to blast
MSTLNHLFDL PEQICYVQCG FCDTILLVSV PCSSLSMVVT VRCGHCTSLL SVNMLKVSFV 60 PLQLLASLSH DQQKEVNPEA AVGLRKTLDI QRSSSMVAYS DHELEEDKNP ENRVINKPPE 120 KRQRAPSAYN RFINREEIRR LKTENPNMAH KEAFSTAAKN WANFPPIHYK EGGESCGQED 180 EETTWNCDAA EVNVEGKGFH ERKAPRHSIW ARTPFE

Functional Description ? help Back to Top
Source	Description
UniProt	Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:9093862, ECO:0000269\|PubMed:9118807}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:12183381}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020539071.1	1e-163	axial regulator YABBY 4 isoform X3
Swissprot	Q9LDT3	1e-73	YAB4_ARATH; Axial regulator YABBY 4
TrEMBL	A0A067K496	1e-159	A0A067K496_JATCU; Uncharacterized protein
STRING	cassava4.1_022861m	1e-125	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6144	28	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G23420.1	6e-76	YABBY family protein

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971] Lora J,Hormaza JI,Herrero M Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT). New Phytol., 2015. 208(2): p. 584-95 [PMID:25991552] Skinner DJ,Brown RH,Kuzoff RK,Gasser CS Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function. BMC Plant Biol., 2016. 16(1): p. 143 [PMID:27350128] Simon MK,Skinner DJ,Gallagher TL,Gasser CS Integument Development in Arabidopsis Depends on Interaction of YABBY Protein INNER NO OUTER with Coactivators and Corepressors. Genetics, 2017. 207(4): p. 1489-1500 [PMID:28971961]