PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S04332.40
Common NameJCGZ_25003, LOC105646582
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family Trihelix
Protein Properties Length: 207aa    MW: 24637.9 Da    PI: 9.1487
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S04332.40genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix42.22.1e-131463886
       trihelix 38 mrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
                   m+e+g++rs++qCk+kw+nl +ryk ++++e +    + +++p++++l+
  Jcr4S04332.40  1 MKEKGYNRSAEQCKCKWKNLVTRYKGCETMEPES--LR-QQFPFYNELQ 46
                   89******************************94..44.489*****98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.6E-10148No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MKEKGYNRSA EQCKCKWKNL VTRYKGCETM EPESLRQQFP FYNELQAIFT ARMQRMLWVE  60
SEVGGAGGSK KKAVQLSSDE EDDNEESEGE KGSIRKKKKG KSMANIGSGS SSSGNSKNLK  120
EILEDFMKQQ MQMEMQWREA FEARENERRM KEMEWRQTME ALENERIMMD RRWREREEQR  180
RIREEARAEK RDALITALLN KLRREEI
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specifically to the core DNA sequence 5'-GTTAC-3'. {ECO:0000269|PubMed:15044016}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00481DAPTransfer from AT5G01380Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012087841.11e-147trihelix transcription factor GT-3b
RefseqXP_020539973.11e-147trihelix transcription factor GT-3b
RefseqXP_020539974.11e-147trihelix transcription factor GT-3b
SwissprotQ9SDW02e-49TGT3A_ARATH; Trihelix transcription factor GT-3a
TrEMBLA0A067JY091e-146A0A067JY09_JATCU; Uncharacterized protein
STRINGPOPTR_0006s10240.12e-94(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17813385
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38250.11e-29Trihelix family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]