PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S04356.10

Common Name

JCGZ_13420, LOC105638607

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

bHLH

Protein Properties

Length: 292aa MW: 32491 Da PI: 6.6292

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S04356.10	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.7	5.8e-10	203	246	7	55
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ ++RR+ri +++ L+el+P+ K++ +++LekA+ Y+k Lq Jcr4S04356.10 203 IAAKNRRERISERLKILQELVPNG-----SKVDLVTMLEKAISYVKFLQ 246 5679*****************5.....5****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	3.7E-12	196	253	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.1E-13	196	255	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.326	196	245	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.35E-11	198	250	No hit	No description
SMART	SM00353	9.9E-12	202	251	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.6E-7	204	246	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
MALAKDRTWA YKFQVEEGET NSFDHIINST NNFAMSHSSS SLGSPSSANS NDFLFHSNNS 60 GISNQTEEAH SLINFAGGFD NFIHANGSLL SFQHNNNNFN YSYKCNSVDP RLSEDINCFQ 120 TATNSNPMTN FGKENIGDWL YCEKTMGTDD DSIIQESGEV QEVNFHKRPN LGENMQALKK 180 QCNSATKKSK ITKPSPSKDP QSIAAKNRRE RISERLKILQ ELVPNGSKVD LVTMLEKAIS 240 YVKFLQLQVK VLATDEFWPV QGGKAPDISQ VKEAIDAILS SQKDRNSSSS SK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012077828.1	0.0	putative transcription factor bHLH086
Swissprot	Q9FJ00	6e-63	BH086_ARATH; Putative transcription factor bHLH086
TrEMBL	A0A067KLM1	0.0	A0A067KLM1_JATCU; Uncharacterized protein
STRING	cassava4.1_031371m	1e-123	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4937	32	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G37800.1	1e-59	RHD SIX-LIKE 1

Link Out ? help Back to Top
Entrez Gene	105638607

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971] Kim CM,Dolan L ROOT HAIR DEFECTIVE SIX-LIKE Class I Genes Promote Root Hair Development in the Grass Brachypodium distachyon. PLoS Genet., 2016. 12(8): p. e1006211 [PMID:27494519] Feng Y, et al. Ethylene promotes root hair growth through coordinated EIN3/EIL1 and RHD6/RSL1 activity in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(52): p. 13834-13839 [PMID:29233944]