PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S04462.40
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family ERF
Protein Properties Length: 125aa    MW: 14135.5 Da    PI: 11.3203
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S04462.40genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP242.31.9e-1391124239
            AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgta 39 
                     y+GVr+++ +g+W+AeIrdp+    r +r++lg+f ta
  Jcr4S04462.40  91 NYRGVRQRP-WGKWAAEIRDPR----RaTRVWLGTFNTA 124
                    59*******.**********82....48********995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003805.9E-691125IPR001471AP2/ERF domain
PROSITE profilePS5103216.51591125IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-1891124IPR001471AP2/ERF domain
CDDcd000181.30E-1891124No hitNo description
SuperFamilySSF541712.62E-1191124IPR016177DNA-binding domain
PfamPF008472.7E-891123IPR001471AP2/ERF domain
PRINTSPR003673.8E-992103IPR001471AP2/ERF domain
PRINTSPR003673.8E-9114125IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 125 aa     Download sequence    Send to blast
MLSPATPPVA QRWLQISHRF VNSPPMVMVI VLVTPLPSVT GAVATTYHLV FTNASDLDTC  60
SICKINGCLG CNFFPPNQEE KKGRRKRIKK NYRGVRQRPW GKWAAEIRDP RRATRVWLGT  120
FNTAV
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012066876.11e-43ethylene-responsive transcription factor ERF109
SwissprotQ9SZ061e-22EF109_ARATH; Ethylene-responsive transcription factor ERF109
TrEMBLA0A067LCS41e-42A0A067LCS4_JATCU; Uncharacterized protein
TrEMBLA0A1L6CB102e-42A0A1L6CB10_9ROSI; AP2/ERF domain-containing transcription factor
TrEMBLA0A1L6CB792e-42A0A1L6CB79_VERFO; AP2/ERF domain-containing transcription factor
STRINGcassava4.1_014137m5e-36(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29623072
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.12e-23redox responsive transcription factor 1
Publications ? help Back to Top
  1. Matsuo M,Oelmüller R
    REDOX RESPONSIVE TRANSCRIPTION FACTOR1 is involved in age-dependent and systemic stress signaling.
    Plant Signal Behav, 2015. 10(11): p. e1051279
    [PMID:26479402]
  2. Bertea CM,Narayana R,Agliassa C,Rodgers CT,Maffei ME
    Geomagnetic Field (Gmf) and Plant Evolution: Investigating the Effects of Gmf Reversal on Arabidopsis thaliana Development and Gene Expression.
    J Vis Exp, 2018.
    [PMID:26649488]
  3. Bahieldin A, et al.
    Ethylene responsive transcription factor ERF109 retards PCD and improves salt tolerance in plant.
    BMC Plant Biol., 2016. 16(1): p. 216
    [PMID:27716054]
  4. Huang D,Lin W,Deng B,Ren Y,Miao Y
    Dual-Located WHIRLY1 Interacting with LHCA1 Alters Photochemical Activities of Photosystem I and Is Involved in Light Adaptation in Arabidopsis.
    Int J Mol Sci, 2018.
    [PMID:29112140]
  5. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]