PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S04574.20

Common Name

JCGZ_14330, LOC105642924, WRKY21

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

WRKY

Protein Properties

Length: 195aa MW: 21755.6 Da PI: 9.4207

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S04574.20	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	103.5	1.1e-32	116	174	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+s++prsYYrCt+++C+vkk+v+r ++d+++v++tYeg Hnh+ Jcr4S04574.20 116 LDDGYRWRKYGQKAVKNSTHPRSYYRCTHHTCNVKKQVQRLSKDTSIVVTTYEGIHNHP 174 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.0E-33	102	174	IPR003657	WRKY domain
SuperFamily	SSF118290	1.31E-28	109	175	IPR003657	WRKY domain
PROSITE profile	PS50811	28.988	111	176	IPR003657	WRKY domain
SMART	SM00774	6.8E-38	116	175	IPR003657	WRKY domain
Pfam	PF03106	5.0E-26	117	174	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence Send to blast
MEGQEAPSPP SPSYLFMPAP SSLPSSALNP GAAPFLEGHV LPAPDIDWVS LLSAAQSENG 60 LMSMEGGSVV NIGEEGKGNI GNNNNNNNEK RKICSRVKKH TRPRFAFQTR SADDILDDGY 120 RWRKYGQKAV KNSTHPRSYY RCTHHTCNVK KQVQRLSKDT SIVVTTYEGI HNHPCEKLME 180 TLTPILKQMQ FLARF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	5e-24	106	173	7	74	Probable WRKY transcription factor 4
2lex_A	5e-24	106	173	7	74	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00317	DAP	Transfer from AT2G46130	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC485273	0.0	KC485273.1 Jatropha curcas WRKY transcription factor 21 (WRKY21) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012083303.1	1e-147	probable WRKY transcription factor 43
Swissprot	Q8GY11	2e-55	WRK43_ARATH; Probable WRKY transcription factor 43
TrEMBL	S5CH38	1e-146	S5CH38_JATCU; WRKY transcription factor 21
STRING	XP_006491470.1	4e-83	(Citrus sinensis)
STRING	XP_006444939.1	4e-83	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3227	34	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46130.1	4e-57	WRKY DNA-binding protein 43

Link Out ? help Back to Top
Entrez Gene	105642924

Publications ? help Back to Top
Xiong W, et al. Genome-wide analysis of the WRKY gene family in physic nut (Jatropha curcas L.). Gene, 2013. 524(2): p. 124-32 [PMID:23644253] Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971] Geilen K,Heilmann M,Hillmer S,Böhmer M WRKY43 regulates polyunsaturated fatty acid content and seed germination under unfavourable growth conditions. Sci Rep, 2017. 7(1): p. 14235 [PMID:29079824]