PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S04578.10

Common Name

LOC105635912

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

NAC

Protein Properties

Length: 258aa MW: 30144.8 Da PI: 5.4631

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S04578.10	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	129.6	2.3e-40	4	138	1	127
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 lpp frF Pt+eel+++yL +k+egk+ l +++vi+ +diy+++PwdLp+ ++++ ++w+fF +++++ g r++r t++gyWk+tg+ Jcr4S04578.10 4 LPPEFRFYPTEEELITFYLLNKLEGKRedlnLVMDRVIPVLDIYDFDPWDLPQlsgdLCYKDPEQWFFFNAIQERESCGGRPKRLTSTGYWKSTGS 99 6899*********************7876666678***********656764455778**************************** PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127 v+s+k++ +g+k+t+vfykgr p+g+kt+W m+ey+ Jcr4S04578.10 100 PGYVYSSKNRCIGVKRTMVFYKGRVPNGRKTEWKMNEYK 138 ************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.66E-44	3	168	IPR003441	NAC domain
PROSITE profile	PS51005	45.649	4	168	IPR003441	NAC domain
Pfam	PF02365	4.8E-21	5	138	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MEDLPPEFRF YPTEEELITF YLLNKLEGKR EDLNLVMDRV IPVLDIYDFD PWDLPQLSGD 60 LCYKDPEQWF FFNAIQERES CGGRPKRLTS TGYWKSTGSP GYVYSSKNRC IGVKRTMVFY 120 KGRVPNGRKT EWKMNEYKAI QRSEASSSST NANPVLRHEY SLCRVYNTSK YRRAFDRRPV 180 GLEISQPRVA EVGGNLTITH QNPPLMGEGR STHESSLLQE YGNSESSNNM VVMPIDNEPI 240 WDWEHLSYWD YDGKYIEI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-31	4	167	17	164	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-31	4	167	17	164	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-31	4	167	17	164	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-31	4	167	17	164	NO APICAL MERISTEM PROTEIN
3swm_A	2e-31	4	167	20	167	NAC domain-containing protein 19
3swm_B	2e-31	4	167	20	167	NAC domain-containing protein 19
3swm_C	2e-31	4	167	20	167	NAC domain-containing protein 19
3swm_D	2e-31	4	167	20	167	NAC domain-containing protein 19
3swp_A	2e-31	4	167	20	167	NAC domain-containing protein 19
3swp_B	2e-31	4	167	20	167	NAC domain-containing protein 19
3swp_C	2e-31	4	167	20	167	NAC domain-containing protein 19
3swp_D	2e-31	4	167	20	167	NAC domain-containing protein 19
4dul_A	2e-31	4	167	17	164	NAC domain-containing protein 19
4dul_B	2e-31	4	167	17	164	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC775318	1e-174	KC775318.1 Jatropha curcas NAC transcription factor 040 gene, complete cds.
GenBank	KC775319	1e-174	KC775319.1 Jatropha curcas NAC transcription factor 041 gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012074437.1	0.0	NAC domain-containing protein 90
TrEMBL	R4NES7	0.0	R4NES7_JATCU; NAC transcription factor 040
STRING	cassava4.1_023875m	1e-111	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF871	34	123

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	3e-72	NAC domain containing protein 90

Link Out ? help Back to Top
Entrez Gene	105635912

Publications ? help Back to Top
Wu Z, et al. Genome-Wide Analysis of the NAC Gene Family in Physic Nut (Jatropha curcas L.). PLoS ONE, 2015. 10(6): p. e0131890 [PMID:26125188]