PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S04584.10
Common NameLOC105642750
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family NAC
Protein Properties Length: 154aa    MW: 17847 Da    PI: 6.5121
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S04584.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM117.31.5e-36201451128
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                    lp+G rF Ptd+elv +yLk+k +g++++ +++++ ++ ++++PwdLp  +k+k+++kew+fF+  ++ ++++ +++r + +gyWk tg  ++v+ 
  Jcr4S04584.10  20 LPVGWRFGPTDQELVAHYLKRKRRGDPIDGSDIVEVIKFCNYNPWDLPglSKCKSTDKEWFFFFYLREYHNNSGQAKRRAGNGYWKITGDPRSVTP 115
                    799***************************9989999***********6448899999**8777777766776677777799************99 PP

            NAM  95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                    + ++e++g+k+tLvf+   +p+   t Wvmhey+ 
  Jcr4S04584.10 116 EeSDEEIGTKRTLVFH---NPE--ATCWVMHEYEY 145
                    867788**********...444..79*******85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-3911149IPR003441NAC domain
PROSITE profilePS5100535.1720154IPR003441NAC domain
PfamPF023651.2E-2221144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MTNNSYSAMA NSPPLFAQNL PVGWRFGPTD QELVAHYLKR KRRGDPIDGS DIVEVIKFCN  60
YNPWDLPGLS KCKSTDKEWF FFFYLREYHN NSGQAKRRAG NGYWKITGDP RSVTPEESDE  120
EIGTKRTLVF HNPEATCWVM HEYEYTAELD SPVK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-221914314138Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC7753431e-144KC775343.1 Jatropha curcas NAC transcription factor 065 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012083071.11e-114NAC domain-containing protein 45 isoform X1
RefseqXP_020538598.11e-115NAC domain-containing protein 91 isoform X2
TrEMBLR4NEW91e-113R4NEW9_JATCU; NAC transcription factor 065
STRINGXP_002515112.11e-41(Ricinus communis)
STRINGXP_002515119.13e-44(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1703136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24590.23e-30TCV-interacting protein
Publications ? help Back to Top
  1. Wu Z, et al.
    Genome-Wide Analysis of the NAC Gene Family in Physic Nut (Jatropha curcas L.).
    PLoS ONE, 2015. 10(6): p. e0131890
    [PMID:26125188]