PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S04660.30

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

bHLH

Protein Properties

Length: 250aa MW: 27384.8 Da PI: 8.6299

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S04660.30	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.4	7.9e-11	158	205	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++YI+sLq Jcr4S04660.30 158 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 205 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.83E-18	152	225	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.59E-10	152	209	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.4E-18	154	225	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.828	154	204	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.4E-8	158	205	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.3E-11	160	210	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence Send to blast
MDPPLINETS FSAANPSSYT LTEIWPFSSI NGGADSGRLG LRMGNLIAGS DGSVEESTVT 60 DQSISGACGN GRKRRVLSSE DESSKMVSTT SSGNELNSSN GKRMKFSGSR NENVNSKVEL 120 EASSSNNDKP AEQSSKPSEP PKQDYIHVRA RRGQATDSHS LAERARREKI SERMKILQDL 180 VPGCNKVIGK ALVLDEIINY IQSLQQQVEF LSMKLEVVNS RMNMCPSIEG FSPKRFWLCI 240 LMMSAKRTAV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF022012	3e-92	KF022012.1 Jatropha curcas basic helix-loop-helix protein (bHLH) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012075467.1	1e-168	transcription factor bHLH79 isoform X1
Refseq	XP_012075469.1	1e-168	transcription factor bHLH79 isoform X2
Swissprot	Q9LV17	3e-78	BH079_ARATH; Transcription factor bHLH79
TrEMBL	A0A067KJA7	1e-167	A0A067KJA7_JATCU; Uncharacterized protein
STRING	XP_002511487.1	1e-122	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1171	34	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62610.1	1e-80	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]