PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S04680.20
Common NameGRAS36, JCGZ_04722, LOC105634083
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family GRAS
Protein Properties Length: 623aa    MW: 67941.4 Da    PI: 5.1847
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S04680.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS459.71.8e-1402606191374
           GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                    lv+lL++cAeav++++l+la+al++++  la++++ +m+++a+yf+eALa+r++r    ly   pps+ + ++ s+ l++   f+e++P+lkf+h+
  Jcr4S04680.20 260 LVHLLMACAEAVQDNNLTLAEALVKQIGFLAASQAGAMRKVATYFAEALARRIYR----LY---PPSPVD-HSLSDILQM--HFYETCPYLKFAHF 345
                    68*****************************************************....44...555554.345555444..5************* PP

           GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlele 192
                    taNqaIlea+eg++rvH+iDf++++G+QWpaLlqaLa Rp+gpp +R+Tg+g+p++++++ l+e+g++La++Ae+++v+fe++ +va++l+dl+ +
  Jcr4S04680.20 346 TANQAILEAFEGKKRVHVIDFSMNEGMQWPALLQALALRPGGPPAFRLTGIGPPSHDDSDHLQEVGWKLAQLAETIHVEFEYRGFVANSLADLDAS 441
                    ************************************************************************************************ PP

           GRAS 193 eLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286
                    +L+++p   E+laVn+v++lh+ll++++++e+    vL++vk+++P++v++veqea+hn++ Fl+rf+e+l+yys+lfdsle +   +s ++++++
  Jcr4S04680.20 442 MLELRPneFESLAVNSVFELHKLLARPGAIEK----VLSVVKQMKPEIVTIVEQEANHNGPVFLDRFTESLHYYSTLFDSLEGS---ASTQDKVMS 530
                    ******77789*********************....***********************************************9...6999***** PP

           GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                    +++lg++i+nvvacega+r+erhetl +Wr rl+++GF pv+l+++a kqa++ll+ ++ +dgyrvee++g+l+lgW++rpL+++SaWr
  Jcr4S04680.20 531 EVYLGKQICNVVACEGADRVERHETLTQWRTRLGSSGFVPVHLGSNAFKQASMLLALFAgGDGYRVEENNGCLTLGWHTRPLIATSAWR 619
                    ****************************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011298.3E-4054127No hitNo description
PfamPF120412.6E-3754121IPR021914Transcriptional factor DELLA, N-terminal
PROSITE profilePS5098568.192234598IPR005202Transcription factor GRAS
PfamPF035146.2E-138260619IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0010218Biological Processresponse to far red light
GO:0042176Biological Processregulation of protein catabolic process
GO:0042538Biological Processhyperosmotic salinity response
GO:2000033Biological Processregulation of seed dormancy process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 623 aa     Download sequence    Send to blast
MKREHSNQHL RLDPTSAGSS STAYSSMAAT SAAPDTSCKS KIWEDEAQGD GGMDELLAVL  60
GYKVRSSDMA EVAQKLEQLE EVMCNVQEDG LSHLSSETVH YNPSDISTWL ESMLSELNPN  120
PNFDPQPSLN DSFFAAPESS TVTSIDFAEQ QKSNKHASGV MAFEESSSDY DLKAIPGKAV  180
FARSHQIDSS SSSPRDPKRL KPTYPPLPPP PPAAAAATSS SSSTISGVSV SGSGSVSFGV  240
STESTRPVVL VDSQENGIRL VHLLMACAEA VQDNNLTLAE ALVKQIGFLA ASQAGAMRKV  300
ATYFAEALAR RIYRLYPPSP VDHSLSDILQ MHFYETCPYL KFAHFTANQA ILEAFEGKKR  360
VHVIDFSMNE GMQWPALLQA LALRPGGPPA FRLTGIGPPS HDDSDHLQEV GWKLAQLAET  420
IHVEFEYRGF VANSLADLDA SMLELRPNEF ESLAVNSVFE LHKLLARPGA IEKVLSVVKQ  480
MKPEIVTIVE QEANHNGPVF LDRFTESLHY YSTLFDSLEG SASTQDKVMS EVYLGKQICN  540
VVACEGADRV ERHETLTQWR TRLGSSGFVP VHLGSNAFKQ ASMLLALFAG GDGYRVEENN  600
GCLTLGWHTR PLIATSAWRV VNK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-6625561814378Protein SCARECROW
5b3h_A2e-6625561813377Protein SCARECROW
5b3h_D2e-6625561813377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00611ChIP-seqTransfer from AT2G01570Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM4052680.0KM405268.1 Jatropha curcas GRAS36 protein (GRAS36) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012072251.10.0DELLA protein GAIP-B
SwissprotQ8S4W70.0GAI1_VITVI; DELLA protein GAI1
TrEMBLA0A067L1V60.0A0A067L1V6_JATCU; GRAS36 protein
STRINGcassava4.1_033968m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80334121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.10.0GRAS family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]