PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S04697.30

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

NAC

Protein Properties

Length: 562aa MW: 63350.6 Da PI: 6.2882

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S04697.30	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	169.7	9.6e-53	20	147	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 l+pGfrFhPtdeelv++yLk+kv++k++++ ++i+evdiyk ePwdL +++k++++ewyfFs d+ky +g r nrat++gyWkatgkd+ev + Jcr4S04697.30 20 LAPGFRFHPTDEELVSYYLKRKVSNKPVRF-NAIAEVDIYKNEPWDLAdkSRLKSRDQEWYFFSALDRKYGNGARMNRATTRGYWKATGKDREVRR 114 579**********************999.89**********75348899999*********************************9 PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++l+ +kktLvf++grap g++t+Wvmheyrl Jcr4S04697.30 115 -DSQLIAMKKTLVFHSGRAPGGQRTNWVMHEYRL 147 .99***************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.03E-55	13	153	IPR003441	NAC domain
PROSITE profile	PS51005	54.345	20	222	IPR003441	NAC domain
Pfam	PF02365	2.1E-27	22	147	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0000976	Molecular Function	transcription regulatory region sequence-specific DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 562 aa Download sequence Send to blast
MGRDSLTPSP QPVAVKTTAL APGFRFHPTD EELVSYYLKR KVSNKPVRFN AIAEVDIYKN 60 EPWDLADKSR LKSRDQEWYF FSALDRKYGN GARMNRATTR GYWKATGKDR EVRRDSQLIA 120 MKKTLVFHSG RAPGGQRTNW VMHEYRLVDE ELDRIGALQV SLLAELLLMV YDDDDAGTNS 180 SVFLFIRKML GLLCVKLFYR TGIISHWQVE TDSYVLCRVF HKNNIGPPNG NRYAPFIEEE 240 WDDGETALIP GEEAVEEVAG HDNCTEINRI EQCLCQILLY GSSAQLTSHG LNLEAQPYRD 300 AASLTSMSRW GVKEPRSNLP GSKLGSKLDE PANFRLELGL MKARLNLSIR QLCGPDTHSI 360 NRNPLNINEL PTECQNVDEF QRDDLLVCKT ETVDDDPPCV LNTEASFPLL QYKRRKHNND 420 TVSNHSNASD KSTRTTQDPC SSTTSTAATT TTTDTTMTTA AATTTAISAL LEFSLMESID 480 PKVNRHAPPP SLGNISLDST VPPSCMKFIN DLQSEIHKIS VERETLKLEM MSAHAMINIL 540 QSRIDFLNKE NEDLKRSIHD KQ

Sequence ? help Back to Top

Protein Sequence Length: 562 aa Download sequence Send to blast

MGRDSLTPSP QPVAVKTTAL APGFRFHPTD EELVSYYLKR KVSNKPVRFN AIAEVDIYKN  60
EPWDLADKSR LKSRDQEWYF FSALDRKYGN GARMNRATTR GYWKATGKDR EVRRDSQLIA  120
MKKTLVFHSG RAPGGQRTNW VMHEYRLVDE ELDRIGALQV SLLAELLLMV YDDDDAGTNS  180
SVFLFIRKML GLLCVKLFYR TGIISHWQVE TDSYVLCRVF HKNNIGPPNG NRYAPFIEEE  240
WDDGETALIP GEEAVEEVAG HDNCTEINRI EQCLCQILLY GSSAQLTSHG LNLEAQPYRD  300
AASLTSMSRW GVKEPRSNLP GSKLGSKLDE PANFRLELGL MKARLNLSIR QLCGPDTHSI  360
NRNPLNINEL PTECQNVDEF QRDDLLVCKT ETVDDDPPCV LNTEASFPLL QYKRRKHNND  420
TVSNHSNASD KSTRTTQDPC SSTTSTAATT TTTDTTMTTA AATTTAISAL LEFSLMESID  480
PKVNRHAPPP SLGNISLDST VPPSCMKFIN DLQSEIHKIS VERETLKLEM MSAHAMINIL  540
QSRIDFLNKE NEDLKRSIHD KQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	1e-43	20	147	15	140	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that binds to the motif 5'-(C/T)A(C/A)G-3' in the promoter of target genes (PubMed:25578968). Binds also to the 5'-CTTGNNNNNCAAG-3' consensus sequence in chromatin (PubMed:26617990). Can bind to the mitochondrial dysfunction motif (MDM) present in the upstream regions of mitochondrial dysfunction stimulon (MDS) genes involved in mitochondrial retrograde regulation (MRR) (PubMed:24045019). Together with NAC051/NAC052 and JMJ14, regulates gene expression and flowering time by associating with the histone demethylase JMJ14, probably by the promotion of RNA-mediated gene silencing (PubMed:25578968, PubMed:26617990). {ECO:0000269\|PubMed:24045019, ECO:0000269\|PubMed:25578968, ECO:0000269\|PubMed:26617990}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00342	DAP	Transfer from AT3G10480	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC775321	0.0	KC775321.1 Jatropha curcas NAC transcription factor 043 gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015876673.1	1e-156	NAC domain containing protein 52 isoform X2
Swissprot	Q9SQX9	1e-101	NAC50_ARATH; NAC domain containing protein 50
TrEMBL	R4NFV5	1e-152	R4NFV5_JATCU; NAC transcription factor 043

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8189	32	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10480.3	1e-127	NAC domain containing protein 50

Publications ? help Back to Top
Zhang S, et al. C-terminal domains of a histone demethylase interact with a pair of transcription factors and mediate specific chromatin association. Cell Discov, 2019. [PMID:26617990]