PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S04725.10
Common NameJCGZ_09023, LOC105636255
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family C2H2
Protein Properties Length: 169aa    MW: 18831.8 Da    PI: 10.272
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S04725.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.60.000894062123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   ++C+ C++ Fs+   L  H  +H
  Jcr4S04725.10 40 FECKTCNRKFSSFQALGGHRASH 62
                   89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.7E-43658IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.82E-939111No hitNo description
PfamPF139126.6E-123964IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.2424067IPR007087Zinc finger, C2H2
SMARTSM003550.194062IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804262IPR007087Zinc finger, C2H2
PfamPF139124.3E-989113IPR007087Zinc finger, C2H2
PROSITE profilePS501578.89189111IPR007087Zinc finger, C2H2
SMARTSM003550.5789111IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028091111IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0071289Biological Processcellular response to nickel ion
GO:2000280Biological Processregulation of root development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MAMKRKFAEI ESLDMAKCLM LLSQSLQTKP IKTSTEQDVF ECKTCNRKFS SFQALGGHRA  60
SHKKPRLPII AEDDNSNKAG SETTKRKMHA CSICGVEFAL GQALGGHMRR HRAVAMGYDH  120
SRRGVSELPV LRRSNSSKRV FGLDLNLTPL ENDLESLFGK MAPKVDPLI
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012074875.11e-124zinc finger protein ZAT11
SwissprotQ9SLD43e-49ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLA0A067KTI11e-122A0A067KTI1_JATCU; Uncharacterized protein
STRINGXP_002533000.13e-72(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.11e-51C2H2 family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]