PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S04736.10

Common Name

JCGZ_23326, LOC105647828

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

NAC

Protein Properties

Length: 439aa MW: 49706.7 Da PI: 6.0236

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S04736.10	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	140.1	1.3e-43	99	226	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknr.atksgyWkatgkdkevls 94 lp+G+rF+P d elv +yLk k+++++l+ + i+ev++yk++P L +++k+ +e+ewyfF++rd+ky++g+r++r a+++gyWkatg dk+v+ Jcr4S04736.10 99 LPAGYRFRPYDAELVGCYLKGKINNETLPP-NRIREVELYKHNPDYLAANYKSgGENEWYFFTPRDRKYPNGDRPSRaAVSDGYWKATGADKPVKI 193 799**********************999.77**********9655552777****************8889*********** PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 +g +vg ++ Lvfykg+ kg+kt+W+mheyr+ Jcr4S04736.10 194 -GGVTVGFRRALVFYKGKPAKGHKTNWIMHEYRA 226 .*****************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.83E-51	97	253	IPR003441	NAC domain
PROSITE profile	PS51005	51.771	99	253	IPR003441	NAC domain
Pfam	PF02365	1.8E-23	100	225	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 439 aa Download sequence Send to blast
MENQPKRGDT VTNPKYNTAI NQSHCPSTYL LSYPTATDLY YPDTYIHNPV VNNVYDNIGN 60 DNSRNCTNTN TIVASASADV DNGGFRSLVD KEEAFLDSLP AGYRFRPYDA ELVGCYLKGK 120 INNETLPPNR IREVELYKHN PDYLAANYKS GGENEWYFFT PRDRKYPNGD RPSRAAVSDG 180 YWKATGADKP VKIGGVTVGF RRALVFYKGK PAKGHKTNWI MHEYRANEPH NKKRGGENNM 240 KLDDWVLCRI YKKFDRAFNA PTLPRAGGLP SSKDDEHEQE TISMPVAGSY EQEIYPYLDA 300 NLVTSHHFNE LAQPFDEHFR YGNPSFGPVL GPNLPFQGYP KPSNEYFNVP PLQDMDTSGD 360 FSRSDQNYDD HMLSSIAPYQ HMNGSNDHMF PSIAPDPHKN DSNDHMFPSI APDPHKNDSN 420 DHMFPNIAPD QHENGSNCD

Sequence ? help Back to Top

Protein Sequence Length: 439 aa Download sequence Send to blast

MENQPKRGDT VTNPKYNTAI NQSHCPSTYL LSYPTATDLY YPDTYIHNPV VNNVYDNIGN  60
DNSRNCTNTN TIVASASADV DNGGFRSLVD KEEAFLDSLP AGYRFRPYDA ELVGCYLKGK  120
INNETLPPNR IREVELYKHN PDYLAANYKS GGENEWYFFT PRDRKYPNGD RPSRAAVSDG  180
YWKATGADKP VKIGGVTVGF RRALVFYKGK PAKGHKTNWI MHEYRANEPH NKKRGGENNM  240
KLDDWVLCRI YKKFDRAFNA PTLPRAGGLP SSKDDEHEQE TISMPVAGSY EQEIYPYLDA  300
NLVTSHHFNE LAQPFDEHFR YGNPSFGPVL GPNLPFQGYP KPSNEYFNVP PLQDMDTSGD  360
FSRSDQNYDD HMLSSIAPYQ HMNGSNDHMF PSIAPDPHKN DSNDHMFPSI APDPHKNDSN  420
DHMFPNIAPD QHENGSNCD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	5e-48	98	253	16	165	NO APICAL MERISTEM PROTEIN
1ut4_B	5e-48	98	253	16	165	NO APICAL MERISTEM PROTEIN
1ut7_A	5e-48	98	253	16	165	NO APICAL MERISTEM PROTEIN
1ut7_B	5e-48	98	253	16	165	NO APICAL MERISTEM PROTEIN
3swm_A	5e-48	98	253	19	168	NAC domain-containing protein 19
3swm_B	5e-48	98	253	19	168	NAC domain-containing protein 19
3swm_C	5e-48	98	253	19	168	NAC domain-containing protein 19
3swm_D	5e-48	98	253	19	168	NAC domain-containing protein 19
3swp_A	5e-48	98	253	19	168	NAC domain-containing protein 19
3swp_B	5e-48	98	253	19	168	NAC domain-containing protein 19
3swp_C	5e-48	98	253	19	168	NAC domain-containing protein 19
3swp_D	5e-48	98	253	19	168	NAC domain-containing protein 19
4dul_A	5e-48	98	253	16	165	NAC domain-containing protein 19
4dul_B	5e-48	98	253	16	165	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC775334	0.0	KC775334.1 Jatropha curcas NAC transcription factor 056 gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012089445.1	0.0	NAC transcription factor 25
TrEMBL	R4N5R2	0.0	R4N5R2_JATCU; NAC transcription factor 056
STRING	cassava4.1_030134m	2e-75	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10112	16	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69490.1	5e-53	NAC-like, activated by AP3/PI

Link Out ? help Back to Top
Entrez Gene	105647828

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971] Wu Z, et al. Genome-Wide Analysis of the NAC Gene Family in Physic Nut (Jatropha curcas L.). PLoS ONE, 2015. 10(6): p. e0131890 [PMID:26125188]