PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S04739.40
Common NameJCGZ_12254, LOC105639581
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family C2H2
Protein Properties Length: 522aa    MW: 54303.9 Da    PI: 8.4907
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S04739.40genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.5e-056385123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   ++C++C+k F r  nL+ H r H
  Jcr4S04739.40 63 FVCEICNKGFQRDQNLQLHRRGH 85
                   89*******************88 PP
2zf-C2H211.10.0012139161123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    +kC +C+k +  +s+ k H + +
  Jcr4S04739.40 139 WKCDKCSKKYAVQSDWKAHSKIC 161
                    58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.7E-56285IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.64E-76285No hitNo description
PfamPF121718.4E-56385IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.9496385IPR007087Zinc finger, C2H2
SMARTSM003550.0176385IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806585IPR007087Zinc finger, C2H2
SMARTSM00355190104134IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.7E-4127160IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.64E-7134159No hitNo description
SMARTSM00355150139159IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009937Biological Processregulation of gibberellic acid mediated signaling pathway
GO:0010029Biological Processregulation of seed germination
GO:0010431Biological Processseed maturation
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 522 aa     Download sequence    Send to blast
MPVDLDNSST ASGEASVSSS GNQPPPPKST ATGKKKRNLP GMPDPDAEVI ALSPKTLLAT  60
NRFVCEICNK GFQRDQNLQL HRRGHNLPWK LRQRSSKEVK KRVYVCPEPT CVHHDPSRAL  120
GDLTGIKKHF CRKHGEKKWK CDKCSKKYAV QSDWKAHSKI CGTREYKCDC GTLFSRRDSF  180
ITHRAFCDAL AEESARATQT PNPNPAAVNL NPNQESEPKV QVDPSPPPPP PPPLAPVAAA  240
PAPPAQSAGV ISSSISPNHS PELPDNPSPI IEEALAPQSA LATAGLNGSS SSSTSSSSNG  300
STSSSVFASL FASSTASGSI QPPQTPAFTD LIRAMAHPDR PADLAPPSST EPISLCLSTS  360
HGSSIFGTAG QERRQYAPPP QPAMSATALL QKAAQIGAAA TNASLLRGFG IVSSSSSAQQ  420
DNMQWGHRQI EPENTSVTAG LGLGLPCDGG SGLKELMMGT PSVFGPKQTT LDFLGLGMAA  480
GGSPSSGLSA LITSIGSGMD VAAAAASFGG GEYSGKDLGR SS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C5e-36135204372Zinc finger protein JACKDAW
5b3h_F5e-36135204372Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00592DAPTransfer from AT5G66730Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012079066.10.0protein indeterminate-domain 2
SwissprotQ9LVQ70.0IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBLA0A067K9Z70.0A0A067K9Z7_JATCU; Uncharacterized protein
STRINGcassava4.1_005416m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22183286
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-113indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]
  2. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  3. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]