PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S04809.10

Common Name

JCGZ_01467, LOC105647749

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

Dof

Protein Properties

Length: 338aa MW: 35691.7 Da PI: 9.1212

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S04809.10	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.2	4.4e-39	69	129	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e+alkcprC+stntkfCy+nnyslsqPr+fCk+CrryWt+GGalrnvPvGgg+r+nk+s+ Jcr4S04809.10 69 PEAALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSK 129 67899*****************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-32	53	118	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	7.4E-33	72	127	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.609	73	127	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	75	111	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009640	Biological Process	photomorphogenesis
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence Send to blast
MVFSSIPVYL DPPNWQQHNQ QSAVSSESHQ LPLPAPPPGC GGGGVSGSAA SIRPGSMSER 60 ARLAKIPQPE AALKCPRCES TNTKFCYFNN YSLSQPRHFC KTCRRYWTRG GALRNVPVGG 120 GCRRNKRSKG NNNNNRSKSP TKAGSASSNG LITNTCTTDN ITGHIIAPPP HLPILPPLHH 180 LNNYNSTDIG LNFGGIQPPV AATAGGGMEF HQLGSTSSAS GAGGGSGGGV GGGCGSFLSN 240 GIVDQWRLQQ VQQFPFMANL GASNGLYQFE NEGINYAGQG RSKPLESGVN DLAAVKMEEM 300 NLSKNFLGIS GNDHQYWSGN NAWTDLSGFT SSSTSHLL

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00407	DAP	Transfer from AT3G55370	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012089351.1	0.0	dof zinc finger protein DOF3.6
TrEMBL	A0A067L975	0.0	A0A067L975_JATCU; Uncharacterized protein
STRING	cassava4.1_011714m	1e-130	(Manihot esculenta)
STRING	cassava4.1_011891m	1e-130	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF656	34	143

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37590.1	8e-42	DNA binding with one finger 2.4

Link Out ? help Back to Top
Entrez Gene	105647749

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]