PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S04900.20
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family bHLH
Protein Properties Length: 249aa    MW: 28099.9 Da    PI: 8.7168
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S04900.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.74.3e-1367113354
                    HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
            HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                    ++h+e+E+rRR+riNs +++Lr+llP +      K +Ka+ L k+v+ +++L
  Jcr4S04900.20  67 KNHKEAEKRRRERINSHLDKLRSLLPCN-----SKTDKASLLAKVVQRVREL 113
                    58*************************8.....7************998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.76464113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-1067113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.74E-1267116No hitNo description
Gene3DG3DSA:4.10.280.101.0E-1368119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.33E-1468122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.1E-1270119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2601.1E-4151216No hitNo description
CDDcd048730.0024151218No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042538Biological Processhyperosmotic salinity response
GO:0005634Cellular Componentnucleus
GO:0009941Cellular Componentchloroplast envelope
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MQPDNLPENS HLYRLLAENG VFNIGPYGFP AMQSLCSSSS SSYHNYPQER SIITDMTPQD  60
RALAALKNHK EAEKRRRERI NSHLDKLRSL LPCNSKTDKA SLLAKVVQRV RELKQQTSQI  120
PGLETFPSET DEITVLSGEY SGDGQLIFKA SLCCEDRSDL LPDLIEILKS LHLKTLSAEM  180
VTLGGRIRNV LIVAAEKDHS IESVHFLQTA LKSLLERSNA SDRSKRRRCL SRSIRGQEFK  240
TYDPFTSPN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012084522.11e-164transcription factor bHLH106
SwissprotO806742e-82BH106_ARATH; Transcription factor bHLH106
TrEMBLA0A067K5D01e-162A0A067K5D0_JATCU; Uncharacterized protein
STRINGcassava4.1_015125m1e-153(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66723249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.15e-84bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]