PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S04946.40
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family HSF
Protein Properties Length: 79aa    MW: 9040.23 Da    PI: 4.5425
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S04946.40genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind811.8e-251574260
                   HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT CS
   HSF_DNA-bind  2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY 60
                   Flkk ye+++de+++++isws ++ +sfv++d++ef+ ++LpkyFkhsn +SF+RQLn+Y
  Jcr4S04946.40 15 FLKKCYEMVDDESTNSIISWSqNSDTSFVIWDMTEFSVQLLPKYFKHSNSSSFIRQLNIY 74
                   9********************55559*********************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.2E-24874IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467855.44E-211174IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.0E-131179IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-131538IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.0E-201574IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-135466IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-136779IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 79 aa     Download sequence    Send to blast
MVKSGDDGSP SVAPFLKKCY EMVDDESTNS IISWSQNSDT SFVIWDMTEF SVQLLPKYFK  60
HSNSSSFIRQ LNIYLVVFC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-162741687Heat shock factor protein 1
5d5v_B3e-162741687Heat shock factor protein 1
5d5v_D3e-162741687Heat shock factor protein 1
5hdk_A2e-161274768Heat shock factor protein 2
5hdk_B2e-161274768Heat shock factor protein 2
5hdk_C2e-161274768Heat shock factor protein 2
5hdk_D2e-161274768Heat shock factor protein 2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020535025.14e-46heat stress transcription factor A-8
SwissprotQ9S7U57e-28HSFA8_ARATH; Heat stress transcription factor A-8
TrEMBLA0A067KPK41e-44A0A067KPK4_JATCU; Uncharacterized protein
STRINGcassava4.1_009665m6e-36(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15923395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67970.13e-30heat shock transcription factor A8