PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S04974.10
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family ERF
Protein Properties Length: 226aa    MW: 25504.4 Da    PI: 9.7529
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S04974.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.61.8e-19107155355
            AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    ++GVr+++ +g+WvAeIr p++   r+r++lg+f taeeAa a++ a+  l+g
  Jcr4S04974.10 107 FRGVRQRH-WGKWVAEIRLPRN---RTRVWLGTFETAEEAAMAYDTAAYMLRG 155
                    8******9.**********955...5**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.01E-31105165No hitNo description
Gene3DG3DSA:3.30.730.105.1E-32106164IPR001471AP2/ERF domain
PROSITE profilePS5103222.524106163IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-23106164IPR016177DNA-binding domain
SMARTSM003802.7E-35106169IPR001471AP2/ERF domain
PRINTSPR003673.3E-11107118IPR001471AP2/ERF domain
PfamPF008471.7E-13107155IPR001471AP2/ERF domain
PRINTSPR003673.3E-11129145IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MEDQFTRRDT FMCKEFPGYS FHEGSKYFDD QVIWTRTNDI NNGSMKSSIT SSDSSSSVEE  60
AEASGFNSIN MNQRSSIDPT QPMKYTGRRL QNQQQKPSLS SPAGKLFRGV RQRHWGKWVA  120
EIRLPRNRTR VWLGTFETAE EAAMAYDTAA YMLRGDYAHL NFPDLKHQLQ ANSLNGSTIS  180
ALLEAKLQAI SQGNNNISGQ KKHILDPSPP TTSSNKDFGE KPTKKI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-20104163363ATERF1
3gcc_A1e-20104163363ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012071137.11e-100ethylene-responsive transcription factor ERF062
TrEMBLA0A067KT243e-99A0A067KT24_JATCU; Uncharacterized protein
STRINGcassava4.1_023072m1e-69(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101023141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13620.14e-35ERF family protein