PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S05103.20
Common NameJCGZ_12025, LOC105638867
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family ARF
Protein Properties Length: 592aa    MW: 65203.5 Da    PI: 5.9924
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S05103.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.91.1e-24122223199
                    EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                    f k+ltpsd+++ g +++p+ +a+++        +++ +  tlt++d +g +W++++iyr++++r++lt+GW++Fv+ ++L +gD+vvF+  ++  
  Jcr4S05103.20 122 FAKILTPSDANNGGGFSVPRFCADSIfpplnyqAEPPVQ--TLTVTDIHGITWDFRHIYRGTPRRHLLTTGWSKFVNHKKLIAGDSVVFM--RNLA 213
                    89*********************999****985444444..9************************************************..5689 PP

                    E..EEEEE-S CS
             B3  90 felvvkvfrk 99 
                    +e++++v+r+
  Jcr4S05103.20 214 GEMFIGVRRA 223
                    999****996 PP
2Auxin_resp89.75.4e-30271355183
     Auxin_resp   1 aahaastksvFevvYnPrast.seFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                    a+++a+++ +FevvY+Pra++ s+Fvv++e ve al+v +++GmR+kma+etedss+ ++ +Gt+++  ++d   W++S+Wr+L+
  Jcr4S05103.20 271 AVERAAQGLPFEVVYYPRAGWySDFVVRAEVVEGALNVFWTAGMRVKMAMETEDSSRMTWfQGTIASAAAADCGPWRGSPWRMLQ 355
                    678999*************9779************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.0E-33115225IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.7E-31116241IPR015300DNA-binding pseudobarrel domain
CDDcd100178.04E-21122222No hitNo description
PROSITE profilePS5086312.421122224IPR003340B3 DNA binding domain
PfamPF023625.2E-22122223IPR003340B3 DNA binding domain
SMARTSM010192.2E-20122224IPR003340B3 DNA binding domain
PfamPF065072.0E-27271355IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010208Biological Processpollen wall assembly
GO:0048830Biological Processadventitious root development
GO:0052543Biological Processcallose deposition in cell wall
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 592 aa     Download sequence    Send to blast
PMPLLQSSAD LRLVDPRIWR ACAGSSVQIP IVNSRVYYFP QGHLEQSSSS ASPSFLSALA  60
RSKPLIACQV SGVQFLADPV TDEVYTKLFL FPIDPSFNHS LPLVEPAGHQ GGDDNEDKIV  120
AFAKILTPSD ANNGGGFSVP RFCADSIFPP LNYQAEPPVQ TLTVTDIHGI TWDFRHIYRG  180
TPRRHLLTTG WSKFVNHKKL IAGDSVVFMR NLAGEMFIGV RRAVRFNNGG DCARWREQIG  240
RGTGDVKMKV KEEGFSRSGR GRVSPEAVME AVERAAQGLP FEVVYYPRAG WYSDFVVRAE  300
VVEGALNVFW TAGMRVKMAM ETEDSSRMTW FQGTIASAAA ADCGPWRGSP WRMLQITWDE  360
PEVLQNAKKV SPWQVEFIAP TPPLHAAFPP AKKFRYPENS GLLIDGEGEL FFPMSGLTNS  420
TMENMNHSLL NYNTFPAGMQ GARQDPFSAF GLSNFLSENA SQMSTDNAFG NKMVPKLQTV  480
STELNIGSSH SDNLSPDSQS SMHSFGTELV GNQCSNSSKV GISSFQLFGK IIRMNQPVES  540
GFDDVSYIDD YGNKGYNENN SLDLGLTSSY TELLNRIDVQ CQRASAVEAC SL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A3e-67237637388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012078139.10.0auxin response factor 17
SwissprotQ84WU60.0ARFQ_ARATH; Auxin response factor 17
TrEMBLA0A067KCM50.0A0A067KCM5_JATCU; Auxin response factor
STRINGcassava4.1_004122m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40303056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.10.0auxin response factor 17
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]
  2. Shi ZH, et al.
    Overexpression of AtTTP affects ARF17 expression and leads to male sterility in Arabidopsis.
    PLoS ONE, 2015. 10(3): p. e0117317
    [PMID:25822980]
  3. de Lucas M, et al.
    Transcriptional Regulation of Arabidopsis Polycomb Repressive Complex 2 Coordinates Cell-Type Proliferation and Differentiation.
    Plant Cell, 2016. 28(10): p. 2616-2631
    [PMID:27650334]
  4. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  5. Wang B, et al.
    Fine regulation of ARF17 for anther development and pollen formation.
    BMC Plant Biol., 2017. 17(1): p. 243
    [PMID:29258431]
  6. Wójcik AM,Nodine MD,Gaj MD
    miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 2024
    [PMID:29321785]
  7. Lin JS, et al.
    MicroRNA160 Modulates Plant Development and Heat Shock Protein Gene Expression to Mediate Heat Tolerance in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 68
    [PMID:29449855]