PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S05251.10
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family LBD
Protein Properties Length: 135aa    MW: 14351 Da    PI: 7.8497
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S05251.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26049.89.9e-1684131147
         DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllk 47 
                    +CaaCk+lrr+C+++C la yfp +  p k++++  +FG+sn +k+l+
  Jcr4S05251.10  84 PCAACKILRRRCTDKCYLASYFPPTTePDKLNIIDSVFGVSNTVKILQ 131
                    7*********************775549*****************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089114.09483135IPR004883Lateral organ boundaries, LOB
PfamPF031952.2E-1484131IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MGNNPFLFAP TDSYSQPSLP SSSSSQSPLQ SPSPSSNSCS SRPSSDSSPS LNSPLQPSQQ  60
SLPQLPSHTS SSHFDPPSAA VVGPCAACKI LRRRCTDKCY LASYFPPTTE PDKLNIIDSV  120
FGVSNTVKIL QVFMI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012073872.11e-51LOB domain-containing protein 1-like
TrEMBLA0A067LMX17e-40A0A067LMX1_JATCU; Uncharacterized protein
STRINGVIT_13s0019g03700.t019e-17(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130334106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28500.12e-17LOB domain-containing protein 11