PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S05344.10

Common Name

JCGZ_06675, LOC105635386

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

LBD

Protein Properties

Length: 215aa MW: 23623.1 Da PI: 6.2363

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S05344.10	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	135.4	2.1e-42	59	158	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 +CaaCk+lrr+Ca++Cvlapyfp ++p kf ++h++FGasn++k+l++lpe +r da+ss+vyeA+ar+rdPvyG++g i +lq+q+++l+a+la+ Jcr4S05344.10 59 PCAACKILRRRCAEKCVLAPYFPPTEPYKFTIAHRVFGASNIIKFLQELPEFQRADAVSSMVYEANARIRDPVYGCAGAICHLQKQVNELQAQLAK 154 7*********************************************************************************************** PP DUF260 97 lkee 100 +++e Jcr4S05344.10 155 AQAE 158 9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.115	58	159	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.7E-42	59	156	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005739	Cellular Component	mitochondrion

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
METLDKATSK PISPIAVPSP LFSYSSPSSS PSPSPSSPSQ SSPTNTLPPP PPLPVVLSPC 60 AACKILRRRC AEKCVLAPYF PPTEPYKFTI AHRVFGASNI IKFLQELPEF QRADAVSSMV 120 YEANARIRDP VYGCAGAICH LQKQVNELQA QLAKAQAELV NMQCQQANLV ALICMEMTQS 180 TNNHQEPILQ QQQYIDTSCF LDETNLGTSW EPLWT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-43	51	166	3	118	LOB family transfactor Ramosa2.1
5ly0_B	1e-43	51	166	3	118	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF430663	1e-176	KF430663.1 Jatropha curcas microsatellite pJcSSR2595 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012073862.1	1e-157	LOB domain-containing protein 1
Swissprot	Q9LQR0	4e-75	LBD1_ARATH; LOB domain-containing protein 1
TrEMBL	A0A067LNW3	1e-156	A0A067LNW3_JATCU; Uncharacterized protein
STRING	POPTR_0008s04350.1	1e-106	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1303	34	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	1e-63	LOB domain-containing protein 1

Link Out ? help Back to Top
Entrez Gene	105635386

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]