PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S05352.10

Common Name

JCGZ_12319

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

Dof

Protein Properties

Length: 220aa MW: 22375.1 Da PI: 8.3865

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S05352.10	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	69.1	6.9e-22	24	59	27	62
zf-Dof 27 sqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +qPr+fCk+CrryWt+GG+lr++PvGgg+rkn k+s Jcr4S05352.10 24 HQPRHFCKSCRRYWTHGGTLRDIPVGGGTRKNAKRS 59 6*******************************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50884	15.948	3	57	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.9E-17	24	57	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	9.0E-13	25	57	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence Send to blast
MTLQELKLLV LTYGRVADNL PFPHQPRHFC KSCRRYWTHG GTLRDIPVGG GTRKNAKRSR 60 TTSSGCTVVG PMTATTGDHN LPLPATPVLV PLMANQATSI QFGCGGGDGK GNVCGSSGNS 120 TVSGSFTSLL NTQGPGFLAL SGFGVGLGSG FEDMGFGLAR GVWPFPGVGE GGAGGVGSNG 180 GSAGGMSNTW QFESGDNGFV GGDCFSWPDL AISTPGNGLK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF022024	0.0	KF022024.1 Jatropha curcas DNA binding with one finger 2 (Dof2) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001295739.1	1e-104	dof zinc finger protein DOF3.4
Refseq	XP_020537181.1	1e-104	dof zinc finger protein DOF3.4-like
TrEMBL	A0A067KA50	1e-122	A0A067KA50_JATCU; Uncharacterized protein
STRING	POPTR_0007s11790.1	1e-77	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2801	31	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66940.1	1e-22	Dof family protein

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]